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ChaPel_1.0

  • Anomalous assembly.
Organism name:
Chaetura pelagica (chimney swift)
Isolate:
M959
Sex:
female
BioSample:
SAMN03018471
BioProject:
PRJNA210808
Submitter:
BGI
Date:
2014/09/04
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_000747805.1 (replaced)
RefSeq assembly accession:
GCF_000747805.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AVOS01
Assembly method:
SOAPdenovo v. 1.6
Genome coverage:
106x
Sequencing technology:
Illumina GA II

IDs: 207321 [UID] 1195788 [GenBank] 1366198 [RefSeq]

See Genome Information for Chaetura pelagica

History (Show revision history)

Comment

In June 2022 421 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length1,119,188,094
Total ungapped length1,074,123,860
Gaps between scaffolds0
Number of scaffolds19,072
Scaffold N503,841,852
Scaffold L5078
Number of contigs84,595
Contig N5030,757
Contig L5010,349
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)84,595

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,119,188,09419,0721,074,123,8603,841,85265,5230