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Source database (GenBank or RefSeq) File type

ASM43858v1

Organism name:: Listeria monocytogenes (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: R2-502
Isolate:: BL9401
BioSample:: SAMN02203126
BioProject:: PRJNA203445
Submitter:: University of California at Davis
Date:: 2013/07/16
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000438585.1 (latest)
RefSeq assembly accession:: GCF_000438585.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 1.4
Genome coverage:: 100x
Sequencing technology:: PacBio RS

IDs: 45491 [UID] 746428 [GenBank] 752188 [RefSeq]

See Genome Information for Listeria monocytogenes

Pathogen Detection Resources

There are 60768 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000438585.1	=	GCF_000438585.1	ASM43858v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::11/27/2023 23:17:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,126
CDSs (total)::3,037
Genes (coding)::3,003
CDSs (with protein)::3,003
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::34
CDSs (without protein)::34
Pseudo Genes (ambiguous residues)::0 of 34
Pseudo Genes (frameshifted)::15 of 34
Pseudo Genes (incomplete)::15 of 34
Pseudo Genes (internal stop)::9 of 34
Pseudo Genes (multiple problems)::4 of 34
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,091,600
Total ungapped length	3,091,600
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP006594.1	=	NC_021838.1
Plasmid unnamed	CP006595.1	=	NC_021828.1

Molecule	Total Length
All	3,091,600
Chromosome	3,034,043
Plasmid unnamed	57,557

	ANI	Query coverage	Subject coverage
Declared type	99.44	92.76	96.23
Best-match type	99.44	92.76	96.23

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ASM43858v1

See Genome Information for Listeria monocytogenes

Pathogen Detection Resources

There are 60768 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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