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Ntom_v01

Organism name:
Nicotiana tomentosiformis (eudicots)
BioSample:
SAMN02981530
BioProject:
PRJNA182501
Submitter:
Philip Morris International R&D
Date:
2013/05/16
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000390325.2 (replaced)
RefSeq assembly accession:
GCF_000390325.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
ASAG01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
146.0x
Sequencing technology:
Illumina HiSeq

IDs: 777281 [UID] 3371088 [GenBank] 3378798 [RefSeq]

See Genome Information for Nicotiana tomentosiformis

History (Show revision history)

Comment

ASAG01052336.1 was suppressed in July 2016 because it may contain contamination.

Global statistics

Total sequence length1,688,466,321
Total ungapped length1,642,733,135
Gaps between scaffolds0
Number of scaffolds159,548
Scaffold N5082,598
Scaffold L505,852
Number of contigs215,609
Contig N5034,053
Contig L5013,931
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)215,609

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,688,310,576159,5471,642,577,39082,59356,0610
MoleculeTotal
Length
Chloroplast Pltd155,745