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Ccap_2.1

Organism name:
Ceratitis capitata (Mediterranean fruit fly)
BioSample:
SAMN02953830
BioProject:
PRJNA168120
Submitter:
The i5k Initiative
Date:
2017/11/06
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000347755.4 (latest)
RefSeq assembly accession:
GCF_000347755.3 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
AOHK02
Assembly method:
AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c
Expected final version:
no
Genome coverage:
152.5x
Sequencing technology:
Illumina HiSeq

IDs: 1470451 [UID] 5737038 [GenBank] 5777888 [RefSeq]

See Genome Information for Ceratitis capitata

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length436,490,799
Total ungapped length435,790,572
Gaps between scaffolds0
Number of scaffolds2,355
Scaffold N501,665,634
Scaffold L5075
Number of contigs3,243
Contig N50845,931
Contig L50140
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)3,243

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced436,474,8192,354435,774,5921,665,6348880
MoleculeTotal
Length
Mitochondrion MT15,980