ASM31385v2

Organism name:: Musa acuminata subsp. malaccensis (wild Malaysian banana)
Infraspecific name:: Strain: Doubled-haploid Pahang (DH-Pahang)
BioSample:: SAMEA2272344
BioProject:: PRJEA82777
Submitter:: Genoscope/IG/CEA
Date:: 2012/11/14
Release type:: minor
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000313855.2 (latest)
RefSeq assembly accession:: GCF_000313855.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CAIC01

IDs: 619771 [UID] 2790838 [GenBank] 2790128 [RefSeq]

See Genome Information for Musa acuminata

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000313855.2	=	GCF_000313855.2	ASM31385v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_000313855.1	=	GCF_000313855.1	ASM31385v1	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	472,231,289
Total ungapped length	390,477,665
Gaps between scaffolds	253
Number of scaffolds	7,512
Scaffold N50	1,311,088
Scaffold L50	65
Number of contigs	29,249
Contig N50	28,326
Contig L50	3,427
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	24,423

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	HE813975.1	=	NC_025202.1	0
Chromosome 2	HE813976.1	=	NC_025203.1	0
Chromosome 3	HE813977.1	=	NC_025204.1	0
Chromosome 4	HE813978.1	=	NC_025205.1	0
Chromosome 5	HE813979.1	=	NC_025206.1	0
Chromosome 6	HE813980.1	=	NC_025207.1	0
Chromosome 7	HE813981.1	=	NC_025208.1	0
Chromosome 8	HE813982.1	=	NC_025209.1	0
Chromosome 9	HE813983.1	=	NC_025210.1	0
Chromosome 10	HE813984.1	=	NC_025211.1	0
Chromosome 11	HE813985.1	=	NC_025212.1	0
unplaced	n/a	n/a	n/a	7,248

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	472,231,289	7,512	390,477,665	1,311,088	21,737	253
Chromosome 1	27,573,629	22	24,111,813	2,245,470	1,090	21
Chromosome 2	22,054,697	22	19,091,485	1,755,924	920	21
Chromosome 3	30,470,407	22	26,487,315	3,785,391	1,196	21
Chromosome 4	30,051,516	13	26,706,884	8,856,836	1,103	12
Chromosome 5	29,377,369	21	25,886,748	2,773,165	1,200	20
Chromosome 6	34,899,179	30	30,423,949	7,330,853	1,378	29
Chromosome 7	28,617,404	22	24,352,417	5,244,634	1,197	21
Chromosome 8	35,439,739	27	30,434,180	2,556,008	1,517	26
Chromosome 9	34,148,863	37	28,747,484	1,544,587	1,553	36
Chromosome 10	33,665,772	33	27,908,620	1,266,487	1,518	32
Chromosome 11	25,514,024	15	22,673,988	7,530,813	1,039	14
unplaced	140,418,690	7,248	103,652,782	183,001	8,026	0

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ASM31385v2

See Genome Information for Musa acuminata

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

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