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ASM3717763v1

Organism name:
Homo sapiens (human)
Isolate:
KSA001
Sex:
female
BioSample:
SAMN31309271
BioProject:
PRJNA1042628
Submitter:
King Abdullah University of Science and Technology
Date:
2024/03/18
Assembly type:
haploid (maternal haplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_037177635.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAYKMB01
Assembly method:
Verkko v. commit 508efb
Expected final version:
yes
Genome coverage:
51x
Sequencing technology:
PacBio Sequel
Linked assembly:
GCA_037177555.1 (paternal haplotype of diploid)

IDs: 21889141 [UID] 55064108 [GenBank]

See Genome Information for Homo sapiens

There are 1140 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,026,074,538
Total ungapped length3,025,947,667
Gaps between scaffolds0
Number of scaffolds85
Scaffold N50154,369,205
Scaffold L508
Number of contigs110
Contig N5096,480,592
Contig L5010
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)85

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_037177645.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM074009.1n/an/a0
Chromosome 2CM074010.1n/an/a0
Chromosome 3CM074011.1n/an/a0
Chromosome 4CM074012.1n/an/a0
Chromosome 5CM074013.1n/an/a0
Chromosome 6CM074014.1n/an/a0
Chromosome 7CM074015.1n/an/a0
Chromosome 8CM074016.1n/an/a0
Chromosome 9CM074017.1n/an/a0
Chromosome 10CM074018.1n/an/a0
Chromosome 11CM074019.1n/an/a0
Chromosome 12CM074020.1n/an/a0
Chromosome 13CM074021.1n/an/a0
Chromosome 14CM074022.1n/an/a0
Chromosome 15CM074023.1n/an/a0
Chromosome 16CM074024.1n/an/a0
Chromosome 17CM074025.1n/an/a0
Chromosome 18CM074026.1n/an/a0
Chromosome 19CM074027.1n/an/a0
Chromosome 20CM074028.1n/an/a0
Chromosome 21CM074029.1n/an/a0
Chromosome 22CM074030.1n/an/a0
Chromosome XCM074031.1n/an/a0
unplacedn/an/an/a61

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,026,057,971843,025,931,100154,369,205250
Chromosome 1246,862,1531246,857,153246,862,15310
Chromosome 2242,096,9421242,045,771242,096,94230
Chromosome 3201,466,9311201,461,931201,466,93110
Chromosome 4191,676,5191191,676,519191,676,51900
Chromosome 5181,678,7621181,678,762181,678,76200
Chromosome 6171,636,5911171,636,591171,636,59100
Chromosome 7160,668,4171160,658,417160,668,41720
Chromosome 8145,092,2951145,082,295145,092,29520
Chromosome 9142,365,5021142,355,502142,365,50220
Chromosome 10137,124,4361137,124,436137,124,43600
Chromosome 11134,887,1841134,887,184134,887,18400
Chromosome 12133,634,7821133,634,782133,634,78200
Chromosome 13113,178,1171113,177,917113,178,11720
Chromosome 1498,185,038198,180,03898,185,03810
Chromosome 1595,225,210195,220,11095,225,21020
Chromosome 1691,348,093191,348,09391,348,09300
Chromosome 1783,893,324183,888,32483,893,32410
Chromosome 1880,057,793180,057,79380,057,79300
Chromosome 1963,649,085163,644,08563,649,08510
Chromosome 2066,492,649166,487,64966,492,64910
Chromosome 2143,459,253143,459,05343,459,25320
Chromosome 2242,716,621142,716,62142,716,62100
Chromosome X154,369,2051154,359,005154,369,20540
unplaced4,293,069614,293,06969,53100
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,567116,56716,56700