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Caltech_Dcor_3.1

Organism name:
Dalotia coriaria (beetles)
Isolate:
IRGN ID8LTWV9N9
BioSample:
SAMN05833264
BioProject:
PRJNA342849
Submitter:
IRIDIAN GENOMES
Date:
2023/06/22
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_025399875.3 (latest)
RefSeq assembly accession:
GCF_025399875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAODOX02
Assembly method:
Megahits v1.1.3, SOAPdenovo2-fusion v2.04, SSPACE-LongRead v1.1, WTDBG2 v 2.3, quickmerge v0.3, Purge_Haplotigs, LR_Gapcloser v1.1, racon v1.3.3, Pilon v1.23, Bionano Solve v3.7.1, HybridScaffold v11657, SPRITE, hicexplorer v2.1.1, HiCAssembler v1.1.1 v. various
Expected final version:
yes
Genome coverage:
44x
Sequencing technology:
Oxford Nanopore; Illumina HiSeq-X; Bionano Genomics; SPRITE

IDs: 22454661 [UID] 56883668 [GenBank] 58751778 [RefSeq]

See Genome Information for Dalotia coriaria

History (Show revision history)

Comment

In April 2024 four sequences were suppressed because they were found to be contaminants

Global statistics

Total sequence length193,876,233
Total ungapped length191,794,958
Gaps between scaffolds0
Number of scaffolds5,356
Scaffold N508,658,950
Scaffold L508
Number of contigs5,926
Contig N501,365,799
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5,356

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced193,876,2335,356191,794,9588,658,9505700