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Taxonomy browser (Oryza nivara)

Oryza nivara

Taxonomy ID: 4536 (for references in articles please use NCBI:txid4536)
current name
Oryza nivara Sharma & Shastry, 1965
NCBI BLAST name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
   Entrez records   
Database name Direct links
Nucleotide 110,681
Protein 647
Genome 1
Popset 415
GEO Datasets 45
PubMed Central 301
Gene 1
SRA Experiments 570
Protein Clusters 97
Identical Protein Groups 137
BioProject 23
BioSample 1,233
Assembly 3
Taxonomy 1

Comments and References:

GRIN (Nov 13, 2020)
Name accessed on 13 November 2020 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland. (https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomysearch.aspx)
Kellogg EA et al. (2020), doi:10.3897/phytokeys.163.38393
Kellogg EA, Abbott JR, Bawa K, Gandhi K, Kailash BR, Ganeshaiah KN, Babu Shrestha U, Raven P. 2020. Checklist of the grasses of India. Phytokeys 163:1-560.
Zheng XM & Ge S 2010
Zheng XM and Ge S. 2010. Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara). Molecular Ecology 19(12): 2439-2454.

Genome Information

Go to NCBI genomic BLAST page for Oryza nivara

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
3 records from this provider supplemental materials Dryad Digital Repository
GOLD: Go0093724 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Oryza nivara taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Oryza nivara taxonomy/phylogenetic Plants of the World Online
Oryza nivara taxonomy/phylogenetic The International Plant Names Index
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Oryza nivara organism-specific WebScipio - eukaryotic gene identification
diArk: Oryza nivara organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

Show organism modifiers


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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