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Taxonomy browser (Oryza)

Oryza

Taxonomy ID: 4527 (for references in articles please use NCBI:txid4527)
current name
Oryza L., 1753
includes:
Porteresia
NCBI BLAST name: monocots
Rank: genus
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 4,837,124 23
Protein 590,119 2
Structure 320 -
Genome 15 -
Popset 1,725 1,105
Conserved Domains 14 1
GEO Datasets 25,624 -
PubMed Central 43,627 43,560
Gene 162,674 -
HomoloGene 9,787 -
SRA Experiments 135,806 366
GEO Profiles 670,939 -
Protein Clusters 15,565 -
Identical Protein Groups 305,749 2
BioProject 7,951 32
BioSample 146,515 192
Assembly 228 -
PubChem BioAssay 491 -
Taxonomy 237 1

Comments and References:

Soreng RJ et al. (2017), doi:10.1111/jse.12262
Soreng RJ, Peterson PM, Romaschenko K, Davidse G, Teisher JK, Clark LG, Barberá P, Gillespie LJ, Zuloaga FO. 2017. A worldwide phylogenetic classification of the Poaceae (Gramineae) II: An update and a comparison of two 2015 classifications. Journal of Systematics and Evolution 55(4):259-290.
Flora of China - Poaceae
Chen S-L et al. 2006. Poaceae (R. Brown) Barnhart. In Wu, Z. Y., P. H. Raven & D. Y. Hong, eds. Flora of China. Vol. 22 (Poaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org
Soreng RJ et al. 2015a, doi:10.1111/jse.12150
Soreng RJ, Peterson PM, Romaschenko K, Davidse G, Zuloaga FO, Judziewicz EJ, Filgueiras TS, Davis JI & Morrone O. 2015. A worldwide phylogenetic classification of the Poaceae (Gramineae). Journal of Systematics and Evolution 53(2): 117-137. Article first published online: 23 Mar 2015. DOI: http://dx.doi.org/10.1111/jse.12150
Ge S et al. 2002
Ge S, Li A, Lu B-R, Zhang S-Z, and Hong D-Y. 2002. A phylogeny of the rice tribe Oryzeae (Poaceae) based on matK sequence data. Amer. J. Botany 89: 1967-1972.
Aggarwal RK et al. 1999
Aggarwal RK, Brar DS, Nandi S, Huang N, and Khush GS. 1999. Phylogenetic relationships among Oryza species revealed by AFLP markers. Theor. Appl. Genetics 98: 1320-1320.
TROPICOS (Aug 27, 2015)
Name accessed on 27 August 2015 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Oryza taxonomy taxonomy/phylogenetic Arctos Specimen Database
Oryza taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Oryza L. taxonomy/phylogenetic Integrated Taxonomic Information System
Oryza taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Oryza taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
2 records from this provider taxonomy/phylogenetic Plants of the World Online
2 records from this provider taxonomy/phylogenetic The International Plant Names Index
Oryza taxonomy/phylogenetic TreeBase
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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