Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Cryptomeria japonica)

Cryptomeria japonica

Taxonomy ID: 3369 (for references in articles please use NCBI:txid3369)
current name
Cryptomeria japonica (Thunb. ex L.f.) D.Don, 1839
Genbank common name: Japanese cedar
NCBI BLAST name: seed plants
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinopsida; Pinidae; Conifers II; Cupressales; Cupressaceae; Cryptomeria
   Entrez records   
Database name Subtree links Direct links
Nucleotide 510,627 510,563
Protein 118,633 117,545
Structure 2 2
Genome 1 1
Popset 69 69
GEO Datasets 1,470 1,470
PubMed Central 1,058 1,016
Gene 74,636 74,636
SRA Experiments 884 866
Protein Clusters 61 61
Identical Protein Groups 88,657 88,629
BioProject 43 41
BioSample 668 650
Assembly 2 2
Taxonomy 3 1

Comments and References:

image:Cryptomeria japonica
Gymnosperm Database
Name verified on date of entry into taxonomy database in: Earle, CJ. 2004 onward. The Gymnosperm Database. (on-line)
Flora of China - Taxodiaceae
Liguo Fu, Yong-fu Yu & Robert R. Mill. Taxodiaceae Warming. In Wu, Z. Y. & P. H. Raven, eds. July 1999. Flora of China. Vol. 4 (Cycadaceae through Fagaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online version
TROPICOS (Sept 25, 2014)
Name accessed on 25 September 2014 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Genome Information

Go to NCBI genomic BLAST page for Cryptomeria japonica
Genome view: 12 chromosomes
Names LG1 LG2 LG3 LG4 LG5 LG6 LG7 LG8 LG9 LG10 LG11 Pltd

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Cryptomeria japonica taxonomy taxonomy/phylogenetic Arctos Specimen Database
dryaddb supplemental materials Dryad Digital Repository
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Cryptomeria japonica (L. f.) D. Don taxonomy/phylogenetic Integrated Taxonomic Information System
Cryptomeria japonica taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Cryptomeria japonica ((Thunb. ex L.f.) D.Don) herbarium/museum collections PlantaeDB, University of Bucharest
Cryptomeria japonica taxonomy/phylogenetic Plants of the World Online
Cryptomeria japonica taxonomy/phylogenetic The International Plant Names Index
Cryptomeria japonica taxonomy/phylogenetic TreeBase
Cryptomeria japonica (L. f.) D. Don taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
diArk: Cryptomeria japonica organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]