Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Chlamydomonas reinhardtii)

Chlamydomonas reinhardtii

Taxonomy ID: 3055 (for references in articles please use NCBI:txid3055)
current name
Chlamydomonas reinhardtii P.A.Dangeard, 1888, nom. cons. 1)
epitype of Chlamydomonas reinhardtii: UTEX:90
includes:
Chlamydomonas reinhardtii strain CC-1373
NCBI BLAST name: green algae
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Chlamydomonas smithii R.W.Howshaw & H.Ettl
reference material of Chlamydomonas smithii: SAG:53.72, SAG:54.72
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; CS clade; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 267,774 267,774 3
Protein 46,804 46,804 -
Structure 279 279 -
Genome 1 1 -
Popset 81 81 -
Conserved Domains 2 2 -
GEO Datasets 1,543 1,543 -
PubMed Central 13,345 13,345 -
Gene 20,013 20,013 -
SRA Experiments 4,748 4,748 -
Protein Clusters 6,978 6,978 -
Identical Protein Groups 20,145 20,145 -
BioProject 1,548 1,548 -
BioSample 4,677 4,677 -
Assembly 11 11 -
PubChem BioAssay 11 11 -
Taxonomy 2 1 -

Notes:

Comments and References:

image:Chlamydomonas reinhardtii
Proeschold T et al. 2005
Proeschold T, Harris EH, Coleman AW. 2005. Portrait of a species: Chlamydomonas reinhardtii. Genetics. 170(4): 1601-1610.
Nozaki H et al. 2002
Nozaki H, Onishi K, Morita E. 2002. Differences in pyrenoid morphology are correlated with differences in the rbcL genes of members of the Chloromonas lineage (Volvocales, Chlorophyceae). Journal of Molecular Evolution. 55(4): 414-30.
Proeschold T et al. 2001
Proeschold T, Marin B, Schloesser UG and Melkonia M. 2001. Molecular phylogeny and taxonomic revision of Chlamydomonas (Chlorophyta). I. Emendation of Chlamydomonas Ehrenberg and Chloromonas Gobi, and description of Oogamochlamys gen. nov. and Lobochlamys gen. nov. Protist 152: 265-300.
Hoshaw RW & Ettl H 1966
Hoshaw RW and Ettl H. 1966. Chlamydomonas smithii sp. nov. - a chlamydomonad interfertile with Chlamydomonas reinhardtii. Journal of Phycology 2: 93-96.

Genome Information

Go to NCBI genomic BLAST page for Chlamydomonas reinhardtii
Genome view: 17 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Chlamydomonas reinhardtii taxonomy/phylogenetic AlgaeBase
3 records from this provider supplemental materials Dryad Digital Repository
519 records from this provider organism-specific Genomes On Line Database
Chlamydomonas reinhardtii culture/stock collections Global Catalogue of Microorganisms
2 records from this provider organism-specific Integrated Microbial Genomes
Chlamydomonas reinhardtii Dangeard, 1899 taxonomy/phylogenetic Integrated Taxonomic Information System
EST Index clones/clone libraries Kazusa DNA Research Institute
Chlamydomonas reinhardtii taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Ocean Biogeographic Information System
Chlamydomonas reinhardtii taxonomy/phylogenetic TreeBase
WebScipio: Chlamydomonas reinhardtii organism-specific WebScipio - eukaryotic gene identification
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
diArk: Chlamydomonas reinhardtii organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
106.13 [1] 106.20 [1] 1132D [10 17] 1132D- [10 17]
13.10 [1] 137 [14 13] 137+ [14 13] 137C+ [7 43 119 142 88]
137c [7 43 119 142 88] 137c (CC-125) [1 1] 137c (cw15) [1 1] 137c mt(+) [6 5]
137c mt+ [6 5] 137c(mt+) [6 5] 137c+, oda6-95+ [1 1] 137c, mt+ [3 2]
137mt+ [2 2] 146.43 [1] 169.84 [1] 17.23 [1]
177.1 [1] 19.32 [1] 20.40 [1] 20.73 [1]
207.31 [1] 209.34 [1] 209.82 [1] 21 gr [13 8]
21 grX [1 1] 21.74 [1] 21.88 [1] 21.90 [1]
213.94 [1] 2137 [55 60 7 20 50] 2137 mt(+) [6 7] 2137 mt+ [6 7]
2137+ [55 60 7 20 50] 2137a [1 2 2 1] 2137mt+ [1] 216r [1 1]
219.8 [1] 21gr [1 51 61 1] 21gr (CC-1690 wild type mt+) & 6145c (CC-1691 wild type mt-) [1 10133] 21gr (CC-1690) [34 3]
21gr(+) [1 51 61 1] 21gr, CC-1039 [1 1] 21gr, pf-14 [1 1] 21gr; CC-1690 [34 3]
22.62 [1] 229.13 [1] 242.44 [1] 25.38 [1]
255.92 [1] 257.67 [1] 258.89 [1] 258.9 [1]
2677 [1 1] 330 [2 2] 42.49 [1] 47.72 [1]
479 [1] 4a+ [3 151 139 1 1 508] 54.10 [1] 6145C [37 19 7 7 94]
7.91 [2] 704 [4 4] 7781 [2 4] 8.13.4 (mt+) [1 1]
806 [1 1] 83/81 [1 1] 85.37 [1] 8511A [1 1]
8511B [1 1] 89.87 [1] A55 [3 6] AJ-A6 [3 3]
AJ-D2 [3 3] B215 [1 1] C-9 [13 13] C-9 mt(-) [2 2]
C-9 mt(-) haploid [1 1] C9 [3 46 51017 1 37 56] C9 (mt-) [1 1] CBR [4 4]
CBS 152030 [1 1] CBS 152280 [1 1] CC-1051 M18 (ac9) mt+ [1 67] CC-124 [2 34 47 8 12 49]
CC-124 wt mt-[137c] [1 1] CC-125 [3 12 98 3438 17 41] CC-125 (mt+) [1 4 4] CC-125 mt+ [1 4 4]
CC-125 wild type mt+ 137c [2 3422 1] CC-1342 mt- [1 1] CC-1373 [15 13 7 11 14] CC-1373 "C. smithii" mt+ [13 13 17]
CC-1373 mt+ [6 5 14] CC-1373, UTEX 1062 [1] CC-1373; UTEX 1062 [2] CC-1375 ac-u-lambda mt+ [1 64]
CC-1418 [1 1] CC-1690 [2 20 44 8 18] CC-1690 wild type mt+ 21gr [6 101435 1] CC-1870 [2]
CC-1952 [1 16 16 11 12 29] CC-1952 S1 C5 mt- [16 16 21] CC-1952 mt- [7 6 14] CC-2290 [1 67 2 59 1]
CC-2290 S1 D2 mt- [17 17 10] CC-2290 wild type mt- S1 D2 [1 1552] CC-2342 [16 13 9 10 15] CC-2342 mt- [19 18 35]
CC-2343 [1 13 9 10 1] CC-2343 mt+ [23 22 37] CC-2344 [17 13 9 10 16] CC-2344 mt+ [23 22 35]
CC-2359 lts1-30 mt- [1 67] CC-2534 [1] CC-2677 (5D) [2 2] CC-277 cw15 mt+ [6 5 13]
CC-2931 [16 14 9 11 15] CC-2931 mt- [23 22 35] CC-2932 [10 9 10] CC-2935 [1 11 9 11 1]
CC-2936 [1 10 9 10 1] CC-2937 [17 10 9 10 17] CC-2938 [1 10 9 10 1] CC-3268 [1 2 2 1 1]
CC-3269 [1 2 2 1] CC-373 ac-u-c-2-21 [1 66] CC-407 [1 1 1] CC-408 [1 5 4 1]
CC-408 wt mt-9 [2 2] CC-4199 lts1-204 [1 67] CC-4533 [2 6 3 17] CC-503 [3 3 41726 36 39410 20]
CC-503 CW92 [1 1 19 1] CC-503 cw92 mt+ [2 6 39670 33 39160] CC-503 mt+ [2 1 1 1] CC-503; cw92 [1 1 19 1]
CC-5816 [1 1 17 5] CC-620 [3 3 20 7 23 5] CC-621 [23 7 23] CC-849 [3 1 2]
CC124 [1 49 7 16 15 47 2] CC124(137c) and CC1021(2137) [1] CC125 mt+ [1 1] CC125+ [2 36 97 27 1 21 40]
CC1690 [5 96 112 5 5 5 192] CC3350 [1] CC406 [12 9] CC406(cw15) [1 1]
CC408 [1 1 1 1] CC425 [26 4 4 26] CC503 [3 37 2 39] CC683 [2 2]
CCAP 11/32A [1 1] CCAP 11/32B [1 1] CCC 1372 [1] CCC 1373 [1]
CCC 1952 [1] CCC 2342 [1] CCC 2931 [1] CCC 2935 [1]
CNS [1 1] CR07 [1] CR165 [1] CR46 [2]
CR46-5 [1] CW 15 [1 74 37] CW 15 mt- [3 5] CW-15, CW-15-2 [1 7]
CW-15-2 [2 16] CW15(+) [2 1 4 43 38] CW15+ [2 1 4 43 38] CW15. [2 1 4 43 38]
CW15mt- [3 2] CreSWIB1 [1 1] CreSWIB2 [1 1] CreWhirly [1 1]
D66 [2 3 2 2 2] D66,cc1690,cc125 [1 1] Dangeard C-9 (mt-) [3 3] FN68 [1 1]
FUD44 [1 9] FUD44-R2 [2 2] GB-2674 [1 1] H-1 [1]
IL [2] J3 (mt-) cw15 [1 1] JA-A3 [3 3] JA-B3 [3 3]
JinCheon1 [1] K01 [1] KGE24 [1] KNUA021 [3]
KkS0801B1 [3 1] KkS0801D2 [1] MCCS 002 [1] NIES 2463 [5 1 3]
NIES 2464 [5 2 4] NIES-2235 [1] NIES-2236 [1] NIES-2237 [1]
NIES-2238 [1] NIES-2239 [1] NIES-2463 [5 1 3] NIES-2464 [5 2 4]
NIVA CHL13 [2 2 1] NO- [3 4 3 4 3] PS-2708 [1] R3+/NO- [3 4 3]
RAC [1] RS-3 [3] S1D2 [1 34405 2] SAG 11-32a [3 2 1]
SAG 11-32b [4 2 3] SAG 11-32c [1 1] SAG 18.79 [1 1] SAG 53.72 [1 1]
SAG 54.72 [2 2 1] SE [2 2] TCC234-2-sq1 [1] TMCC8 [1]
TRC01 [1] UPMC-A0054 [1 1] UPMC-A0059 [1] UTEX 1062 [3 1 1]
UTEX 2243 [1] UTEX 2244 [1 1] UTEX 89 [18 11 1] UTEX 90 [3 1 1]
UTEX-89 [18 11 1] UVM11 [8 8 1 1 8] UWCC [1] WRC01 [1 5 5 5 16]
WRC02 [5 5 5] WRC03 [5 5 5] WRC04 [5 5 5] WRC05 [5 5 5]
WRC06 [5 5 5] WRC07 [5 5 5] WRC08 [5 5 4] WRC09 [5 5 5]
WRC10 [4 4 4] WRC50 [1 1 1] WT137c strain wild type 137C [1 94 10] Wild type C-9 [1 2]
Y-1 [1 2] YSW17 [1] YSW18 [1] ars11 [2 3 2]
c137 [1 1 1 3] c85-20 [1 1] cc-1928 [1 2] cc-278 [2 2]
cc-400 [1 4] cc124- [1 49 7 16 15 47 2] cc125 [2 36 97 27 1 21 40] cc2290 [1]
cc620 [5 4] cc621 [3 3] ccs1-2 [1 1] ccs1-4 [1 1]
ccs1-ac206 [1 1] cw 15 mt+ [3 5] cw 15mt- [1 1] cw-15 [1 74 37]
cw-15-mt+ [3 5] cw15 strain CW 15 [1 74 37] cw15 (mt-) [9 10] cw15 mt+ [9 10]
cw15 mt- [9 10] cw15[-] [2 1 4 43 38] cw15_325arg [5 6 4] cw15arg7 [2 2]
cw92 [4 5] dw15-1 [2 24 28 1 2 25] fus1-1 [1] mutant DC2III [1]
pf23 [1 1] pgp1-N142 [1 1] spr-u-1-6-2 [1 1] wild type [2 27 54 99 17 54]
wild type 137C [1 94 10] wild type CC-125 [1 1] wild-type [2 27 54 99 17 54] wildtype strain 137 (+) [1 1]
wildtype strain 137c (+) [1 1] wt 137 [6 6] wt 137c strain wild type 137C [1 94 10]
substrain
CW15 strain CW 15 [1 74 37]
type
genomic DNA [1 1]
variety
Dangeard authority Chlamydomonas reinhardtii P.A.Dangeard [1 1]
cultivar
CC125 [1 1] Dangeard [1 1]
isolate
1132 [2 2] 8-7 [1] =mating type minus [1 1] ARAS125 [1]
BMS-1 [2 1 1] Bhiwandi 03-04 [1] C.reinhardtii [1] CB6-1 [1]
CB6-3 [1 1 1] CC-124 [10 1 1] CC-1952 [6 19 5] CC-2931 [11 20 10]
CC-620 [1] CC125 [1 1 2] CC400.mt- [2 2] CC425 [2 2]
CCAP 11/32B [1 1] CCAP 11/32D [1] CL3-1 [2 1 1] CrGPATcl [1 1]
CrGPATer [1 1] DGTT1 [1 1] DGTT2 [1 1] DGTT3 [1 1]
DGTT4 [1 1] EC290411 [1 1] GH-88 [1] GTD4C [1]
Harris 6 [1] IMP-BG-128 [3 1] JG4-1 [2 1 1] Jarvik 124 [3]
Jarvik 356 [3] Jarvik 6 [3] MI01 [1 1] P1 [1 1]
P10 [1 1] P11 [1 1] P12 [1 1] P13 [1 1]
P14 [1 1] P15 [1 1] P16 [1 1] P17 [1 1]
P18 [1 1] P2 [1 1] P20 [1 1] P3 [1 1]
P4 [1 1] P5 [1 1] P6 [1 1] P7 [1 1]
P8 [1 1] SAG 11-31 [1] SAG 11-32a [1] SAG 11-32b [6 1]
SAG 11-32c [1] SAG 18.79 [1] SAG 54.72 [1] SAG 73.72 [1]
SAG 77.81 [1] SAG 83.81 [1] SH1602378.08FU [1] SHT0002 [1 1]
SHT0003 [1 1] SHT0004 [1 1] SHT0005 [1 1] SHT0006 [1 1]
SHT0007 [1 1] SHT0008 [1 1] SHT0009 [1 1] SHT0010 [1 1]
SHT0011 [1 1] SHT0012 [1 1] SHT0013 [1 1] SHT0014 [1 1]
SHT0015 [1 1] SHT0016 [1 1] SHT0017 [1 1] SHT0018 [1 1]
SHT0019 [1 1] SHT0020 [1 1] SHT0021 [1 1] SRMS39 [1]
TCC 132 [2 1 1] UMT-B14 [1] UTCC 85 [1] UTM7-1 [2 1 1]
W13-1 [2 1 1] W13-2 [2 1 1] Z7a [1] f1 [1]
sub-species
Dangard authority Chlamydomonas reinhardtii P.A.Dangeard [1 1]
specimen-voucher
CLS005 [1]
authority
Chlamydomonas reinhardtii P.A.Dangeard [1 1]
culture-collection
CCAP:11/32A [1] CCAP:11/32C [1] CCAP:11/32CW15 [1] CCAP:11/45 [1]
NIES:2463 [6 4] NIES:2464 [4 3] NIES:3378 [3 3] NIES:3379 [3 3]
NIES:3380 [3 3] NIES:3381 [3 3] SAG:11-32a [1] SAG:11-32b [2 2]
SAG:11-32c [1 1] SAG:18.79 [1 1] SAG:53.72 [1 1] TCC:234-2 [1]
UTEX:2247 [1]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]