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Conserved domains on  [gi|18414282|ref|NP_567438|]
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Chlorophyll A-B binding family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LHCA5 super family cl47402
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 160-193 1.87e-08

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


The actual alignment was detected with superfamily member COG5743:

Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 49.17  E-value: 1.87e-08
                        10        20        30
                ....*....|....*....|....*....|....
gi 18414282 160 GFmTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193
Cdd:COG5743  24 GF-TPYAERLNGRLAMIGFVALLLIELLTGQGFL 56
LHCA5 super family cl47402
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 96-125 6.79e-08

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


The actual alignment was detected with superfamily member COG5743:

Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 47.63  E-value: 6.79e-08
                        10        20        30
                ....*....|....*....|....*....|
gi 18414282  96 ERINGRLAMVGFVAAIAMELSKGENVFAQI 125
Cdd:COG5743  30 ERLNGRLAMIGFVALLLIELLTGQGFLHWL 59
 
Name Accession Description Interval E-value
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 160-193 1.87e-08

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 49.17  E-value: 1.87e-08
                        10        20        30
                ....*....|....*....|....*....|....
gi 18414282 160 GFmTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193
Cdd:COG5743  24 GF-TPYAERLNGRLAMIGFVALLLIELLTGQGFL 56
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 96-125 6.79e-08

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 47.63  E-value: 6.79e-08
                        10        20        30
                ....*....|....*....|....*....|
gi 18414282  96 ERINGRLAMVGFVAAIAMELSKGENVFAQI 125
Cdd:COG5743  30 ERLNGRLAMIGFVALLLIELLTGQGFLHWL 59
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
94-186 1.47e-04

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 40.37  E-value: 1.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18414282    94 APERINGRLAMVGFVAAIAMEL--SKGENVFAQISDGGV-----GWFLGTTALLTLASMVPL----FKGIRAEAKSK--- 159
Cdd:pfam00504  32 EAELKHGRWAMLAVLGALVPEAlgKLGGGNEPVWFEAGAvalhaQSVPTLLALQILLLMGFLelarWQGGKAPGLGGggd 111

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 18414282   160 ------------GFMTSD---------AELWNGRFAMLGLVALAFTEY 186
Cdd:pfam00504 112 rgypggfgfdplGLAKKDpetlaelklKELKNGRLAMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 160-193 1.87e-08

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 49.17  E-value: 1.87e-08
                        10        20        30
                ....*....|....*....|....*....|....
gi 18414282 160 GFmTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193
Cdd:COG5743  24 GF-TPYAERLNGRLAMIGFVALLLIELLTGQGFL 56
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 96-125 6.79e-08

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 47.63  E-value: 6.79e-08
                        10        20        30
                ....*....|....*....|....*....|
gi 18414282  96 ERINGRLAMVGFVAAIAMELSKGENVFAQI 125
Cdd:COG5743  30 ERLNGRLAMIGFVALLLIELLTGQGFLHWL 59
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
94-186 1.47e-04

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 40.37  E-value: 1.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18414282    94 APERINGRLAMVGFVAAIAMEL--SKGENVFAQISDGGV-----GWFLGTTALLTLASMVPL----FKGIRAEAKSK--- 159
Cdd:pfam00504  32 EAELKHGRWAMLAVLGALVPEAlgKLGGGNEPVWFEAGAvalhaQSVPTLLALQILLLMGFLelarWQGGKAPGLGGggd 111

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 18414282   160 ------------GFMTSD---------AELWNGRFAMLGLVALAFTEY 186
Cdd:pfam00504 112 rgypggfgfdplGLAKKDpetlaelklKELKNGRLAMIAFLGFFVQEL 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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