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Report for CCDS94636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94636.1 Public Homo sapiens X MAGT1 24 110 108 CCDS HistoryNCBI Gene:84061Re-query CCDS DB by CCDS ID:94636.1Re-query CCDS DB by GeneID:84061See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94636.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358075.11 ENSP00000354649.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358075.11Link to Ensembl Protein Viewer:ENSP00000354649.6Re-query CCDS DB by Nucleotide ID:ENST00000358075Re-query CCDS DB by Protein ID:ENSP00000354649
Original member Current member EBI ENST00000618282.5 ENSP00000480732.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000618282.5Link to Ensembl Protein Viewer:ENSP00000480732.1Re-query CCDS DB by Nucleotide ID:ENST00000618282Re-query CCDS DB by Protein ID:ENSP00000480732
Original member Current member NCBI NM_001367916.1 NP_001354845.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001367916.1Link to Protein Sequence:NP_001354845.1Re-query CCDS DB by Nucleotide ID:NM_001367916Re-query CCDS DB by Protein ID:NP_001354845Link to BLAST:NP_001354845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001354845.1 335 Q9H0U3-1 335 100% 0 0

Chromosomal Locations for CCDS 94636.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 77829220 77829235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77830805 77830895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77841246 77841320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77853901 77853964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77855501 77855590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77856733 77856873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77857357 77857497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77870808 77870925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77875428 77875597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77895309 77895410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGCAGCGCGTTGGCGGTTTTGGTGTGTCTCTGTGACCATGGTGGTGGCGCTGCTCATCGTTTGCGACG
TTCCCTCAGCCTCTGCCCAAAGAAAGAAGGAGATGGTGTTATCTGAAAAGGTTAGTCAGCTGATGGAATG
GACTAACAAAAGACCTGTAATAAGAATGAATGGAGACAAGTTCCGTCGCCTTGTGAAAGCCCCACCGAGA
AATTACTCCGTTATCGTCATGTTCACTGCTCTCCAACTGCATAGACAGTGTGTCGTTTGCAAGCAAGCTG
ATGAAGAATTCCAGATCCTGGCAAACTCCTGGCGATACTCCAGTGCATTCACCAACAGGATATTTTTTGC
CATGGTGGATTTTGATGAAGGCTCTGATGTATTTCAGATGCTAAACATGAATTCAGCTCCAACTTTCATC
AACTTTCCTGCAAAAGGGAAACCCAAACGGGGTGATACATATGAGTTACAGGTGCGGGGTTTTTCAGCTG
AGCAGATTGCCCGGTGGATCGCCGACAGAACTGATGTCAATATTAGAGTGATTAGACCCCCAAATTATGC
TGGTCCCCTTATGTTGGGATTGCTTTTGGCTGTTATTGGTGGACTTGTGTATCTTCGAAGAAGTAATATG
GAATTTCTCTTTAATAAAACTGGATGGGCTTTTGCAGCTTTGTGTTTTGTGCTTGCTATGACATCTGGTC
AAATGTGGAACCATATAAGAGGACCACCATATGCCCATAAGAATCCCCACACGGGACATGTGAATTATAT
CCATGGAAGCAGTCAAGCCCAGTTTGTAGCTGAAACACACATTGTTCTTCTGTTTAATGGTGGAGTTACC
TTAGGAATGGTGCTTTTATGTGAAGCTGCTACCTCTGACATGGATATTGGAAAGCGAAAGATAATGTGTG
TGGCTGGTATTGGACTTGTTGTATTATTCTTCAGTTGGATGCTCTCTATTTTTAGATCTAAATATCATGG
CTACCCATACAGCTTTCTGATGAGTTAA

Translation (335 aa):
MAARWRFWCVSVTMVVALLIVCDVPSASAQRKKEMVLSEKVSQLMEWTNKRPVIRMNGDKFRRLVKAPPR
NYSVIVMFTALQLHRQCVVCKQADEEFQILANSWRYSSAFTNRIFFAMVDFDEGSDVFQMLNMNSAPTFI
NFPAKGKPKRGDTYELQVRGFSAEQIARWIADRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLRRSNM
EFLFNKTGWAFAALCFVLAMTSGQMWNHIRGPPYAHKNPHTGHVNYIHGSSQAQFVAETHIVLLFNGGVT
LGMVLLCEAATSDMDIGKRKIMCVAGIGLVVLFFSWMLSIFRSKYHGYPYSFLMS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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