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Report for CCDS9360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9360.1 Public Homo sapiens 13 SMAD9 24 110 108 CCDS HistoryNCBI Gene:4093Re-query CCDS DB by CCDS ID:9360.1Re-query CCDS DB by GeneID:4093See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350148.10 ENSP00000239885.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000350148.10Link to Ensembl Protein Viewer:ENSP00000239885.6Re-query CCDS DB by Nucleotide ID:ENST00000350148Re-query CCDS DB by Protein ID:ENSP00000239885
Original member Current member NCBI NM_001378621.1 NP_001365550.1 Accepted alive Link to Nucleotide Sequence:NM_001378621.1Link to Protein Sequence:NP_001365550.1Re-query CCDS DB by Nucleotide ID:NM_001378621Re-query CCDS DB by Protein ID:NP_001365550Link to BLAST:NP_001365550.1
Original member Current member NCBI NM_005905.6 NP_005896.1 Accepted alive Link to Nucleotide Sequence:NM_005905.6Link to Protein Sequence:NP_005896.1Re-query CCDS DB by Nucleotide ID:NM_005905Re-query CCDS DB by Protein ID:NP_005896Link to BLAST:NP_005896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365550.1 430 O15198-2 430 100% 0 0
NP_005896.1 430 O15198-2 430 100% 0 0

Chromosomal Locations for CCDS 9360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36848676 36848819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36853419 36853675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36865537 36865758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36872658 36872915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36879278 36879689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGCACTCCACCACCCCCATCAGCTCCCTCTTCTCCTTCACCAGCCCCGCAGTGAAGAGACTGCTAGGCT
GGAAGCAAGGAGATGAAGAGGAAAAGTGGGCAGAGAAGGCAGTGGACTCTCTAGTGAAGAAGTTAAAGAA
GAAGAAGGGAGCCATGGACGAGCTGGAGAGGGCTCTCAGCTGCCCGGGGCAGCCCAGCAAATGCGTCACG
ATTCCCCGCTCCCTGGACGGGCGGCTGCAGGTGTCCCACCGCAAGGGCCTGCCCCATGTGATTTACTGTC
GCGTGTGGCGCTGGCCGGATCTGCAGTCCCACCACGAGCTGAAGCCGCTGGAGTGCTGTGAGTTCCCATT
TGGCTCCAAGCAGAAAGAAGTGTGCATTAACCCTTACCACTACCGCCGGGTGGAGACTCCAGTACTGCCT
CCTGTGCTCGTGCCAAGACACAGTGAATATAACCCCCAGCTCAGCCTCCTGGCCAAGTTCCGCAGCGCCT
CCCTGCACAGTGAGCCACTCATGCCACACAACGCCACCTATCCTGACTCTTTCCAGCAGCCTCCGTGCTC
TGCACTCCCTCCCTCACCCAGCCACGCGTTCTCCCAGTCCCCGTGCACGGCCAGCTACCCTCACTCCCCA
GGAAGTCCTTCTGAGCCAGAGAGTCCCTATCAACACTCAGACTTTCGACCAGTTTGTTACGAGGAGCCCC
AGCACTGGTGCTCGGTCGCCTACTATGAACTGAACAACCGAGTTGGGGAGACATTCCAGGCTTCCTCCCG
AAGTGTGCTCATAGATGGGTTCACCGACCCTTCAAATAACAGGAACAGATTCTGTCTTGGACTTCTTTCT
AATGTAAACAGAAACTCAACGATAGAAAATACCAGGAGACATATAGGAAAGGGTGTGCACTTGTACTACG
TCGGGGGAGAGGTGTATGCCGAGTGCGTGAGTGACAGCAGCATCTTTGTGCAGAGCCGGAACTGCAACTA
TCAACACGGCTTCCACCCAGCTACCGTCTGCAAGATCCCCAGCGGCTGCAGCCTCAAGGTCTTCAACAAC
CAGCTCTTCGCTCAGCTCCTGGCCCAGTCAGTTCACCACGGCTTTGAAGTCGTGTATGAACTGACCAAGA
TGTGTACTATCCGGATGAGTTTTGTTAAGGGTTGGGGTGCTGAGTATCATCGCCAGGATGTCACCAGCAC
CCCCTGCTGGATTGAGATTCATCTTCATGGGCCACTGCAGTGGCTGGACAAAGTTCTGACTCAGATGGGC
TCTCCACATAACCCCATTTCTTCAGTGTCTTAA

Translation (430 aa):
MHSTTPISSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDSLVKKLKKKKGAMDELERALSCPGQPSKCVT
IPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYRRVETPVLP
PVLVPRHSEYNPQLSLLAKFRSASLHSEPLMPHNATYPDSFQQPPCSALPPSPSHAFSQSPCTASYPHSP
GSPSEPESPYQHSDFRPVCYEEPQHWCSVAYYELNNRVGETFQASSRSVLIDGFTDPSNNRNRFCLGLLS
NVNRNSTIENTRRHIGKGVHLYYVGGEVYAECVSDSSIFVQSRNCNYQHGFHPATVCKIPSGCSLKVFNN
QLFAQLLAQSVHHGFEVVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMG
SPHNPISSVS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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