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Report for CCDS87917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87917.1 Public Mus musculus 1 Uhmk1 23 108 98 CCDS HistoryNCBI Gene:16589Re-query CCDS DB by CCDS ID:87917.1Re-query CCDS DB by GeneID:16589See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150821.7 ENSMUSP00000115622.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150821.7Link to Ensembl Protein Viewer:ENSMUSP00000115622.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150821Re-query CCDS DB by Protein ID:ENSMUSP00000115622
Original member Current member NCBI NM_001360809.1 NP_001347738.1 Accepted alive Link to Nucleotide Sequence:NM_001360809.1Link to Protein Sequence:NP_001347738.1Re-query CCDS DB by Nucleotide ID:NM_001360809Re-query CCDS DB by Protein ID:NP_001347738Link to BLAST:NP_001347738.1

Chromosomal Locations for CCDS 87917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 170199867 170200013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170205115 170205203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170207114 170207212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170207346 170207422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170208655 170208749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170211031 170211222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170212236 170212528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170214498 170214498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGACTTTATATGGAGTCTTTACCATACACTTCTCTCCCAATGTGCCATCACGCTGTCTGCTGCTTGAAC
TCCTGGATGTCAGTGTTTCGGAATTGCTTTTATATTCCAGTCATCAGGGCTGCTCCATGTGGATGATACA
GCACTGTGCCCGAGATGTTCTGGAGGCCCTCGCTTTTCTTCACCATGAGGGCTACGTCCATGCAGACCTC
AAACCACGAAACATCCTGTGGAGTGCGGAGAATGAGTGTTTTAAGCTTATTGACTTTGGACTCAGCTTCA
AAGAAGGCAATCAGGACGTAAAGTATATTCAGACAGACGGGTATCGCGCTCCTGAAGCAGAGCTGCAGAA
CTGCTTGGCCCAGGCCGGCCTGCAGAGTGATACAGAATGTACCTCAGCTGTTGATCTGTGGAGCCTCGGA
ATCATTTTACTGGAAATGTTCTCAGGAATGAAGCTGAAACATACAGTCAGATCTCAGGAATGGAAGGCAA
ACAGTTCTGCTATTATTGATCATATATTTGCCAGTAAAGCAGTGGTGAATGCCGCAATTCCAGCCTATCA
CCTCAGAGACCTTATCAAAAGCATGCTTCATGATGACCCGGGCAGAAGAATCCCTGCTGAGATGGCATTG
TGCAGCCCATTCTTTAGCATTCCTTTTGCCCCTCATATTGAAGATCTGGTGATGCTTCCGACTCCAGTGC
TCAGGCTCCTCAATGTGCTGGATGATGATTACCTTGAAAATGAAGATGAATATGAAGATGTTGTAGAAGA
TGTGAAAGAGGAGTGTCAGAAATATGGACCAGTGGTTTCTCTGCTTGTTCCAAAGGAAAATCCTGGCAGA
GGACAAGTCTTCGTTGAGTACGCGAACGCTGGTGATTCCAAAGCTGCTCAGAAGTTGCTGACTGGGAGGA
TGTTTGACGGGAAGTTTGTTGTGGCTACATTCTACCCGCTGAGTGCCTACAAGAGGGGATATCTTTATCA
AACCTTGCTTTAA

Translation (330 aa):
MTLYGVFTIHFSPNVPSRCLLLELLDVSVSELLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADL
KPRNILWSAENECFKLIDFGLSFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLG
IILLEMFSGMKLKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPGRRIPAEMAL
CSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKENPGR
GQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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