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Report for CCDS54357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54357.1 Public Homo sapiens 2 FBXO11 24 110 108 CCDS HistoryNCBI Gene:80204Re-query CCDS DB by CCDS ID:54357.1Re-query CCDS DB by GeneID:80204See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54357.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403359.8 ENSP00000384823.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000403359.8Link to Ensembl Protein Viewer:ENSP00000384823.4Re-query CCDS DB by Nucleotide ID:ENST00000403359Re-query CCDS DB by Protein ID:ENSP00000384823
Original member Current member NCBI NM_001190274.2 NP_001177203.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001190274.2Link to Protein Sequence:NP_001177203.1Re-query CCDS DB by Nucleotide ID:NM_001190274Re-query CCDS DB by Protein ID:NP_001177203Link to BLAST:NP_001177203.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177203.1 927 Q86XK2-1 927 100% 0 0

Chromosomal Locations for CCDS 54357.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 47808118 47808247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47808329 47808427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47809158 47809266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47809600 47809707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47810316 47810426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47813234 47813377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47813791 47813867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47818779 47818864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47818956 47819078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47820362 47820456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47822218 47822303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47823143 47823360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47832349 47832486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47832572 47832678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47832769 47832880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47832964 47833070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47834579 47834711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47834788 47834871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47835872 47836001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47838859 47839003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47839419 47839500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47839642 47839769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47905489 47905720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2784 nt):
ATGAACTCCGTCCGAGCCGCCAACCGGAGACCCAGGCGAGTGTCGCGGCCGCGCCCGGTGCAGCAACAGC
AGCAGCAGCCCCCGCAGCAGCCGCCGCCGCAGCCGCCCCAGCAGCAGCCGCCCCAGCAGCAGCCTCCGCC
GCCGCCGCAGCAGCAGCAGCAGCAGCAGCCTCCGCCGCCGCCACCGCCGCCTCCGCCGCTGCCTCAGGAG
CGGAACAACGTCGGCGAGCGGGATGATGATGTGCCTGCAGATATGGTTGCAGAAGAATCAGGTCCTGGTG
CACAAAATAGTCCATACCAACTTCGTAGAAAAACTCTTTTGCCGAAAAGAACAGCGTGTCCCACAAAGAA
CAGTATGGAGGGCGCCTCAACTTCAACTACAGAAAACTTTGGTCATCGTGCAAAACGTGCAAGAGTGTCT
GGAAAATCACAAGATCTATCAGCAGCACCTGCTGAACAGTATCTTCAGGAGAAACTGCCAGATGAAGTGG
TTCTAAAAATCTTCTCTTACTTGCTGGAACAGGATCTTTGTAGAGCAGCTTGTGTATGTAAACGCTTCAG
TGAACTTGCTAATGATCCAATTTTGTGGAAACGATTATATATGGAAGTATTTGAATATACTCGCCCTATG
ATGCATCCTGAACCTGGAAAATTCTACCAGATTAATCCAGAAGAGTATGAACATCCAAATCCCTGGAAAG
AGAGTTTCCAGCAGTTGTATAAAGGTGCACATGTAAAGCCAGGATTTGCTGAACATTTCTACAGTAACCC
TGCAAGATATAAAGGAAGAGAAAATATGTTGTATTATGATACTATTGAAGATGCCCTTGGTGGGGTACAA
GAGGCTCATTTTGATGGACTTATCTTTGTTCATTCTGGAATATATACTGATGAATGGATATATATTGAAT
CTCCAATCACCATGATTGGTGCAGCACCTGGGAAAGTGGCAGACAAAGTTATAATTGAAAACACTAGAGA
TTCAACCTTCGTTTTTATGGAAGGCTCTGAAGATGCTTATGTTGGATATATGACAATAAGGTTTAACCCT
GATGACAAATCTGCACAACACCACAATGCACACCACTGCTTAGAGATTACAGTAAATTGTAGCCCTATTA
TTGATCACTGTATCATCCGAAGTACATGTACAGTTGGTTCTGCAGTATGTGTTAGTGGTCAAGGAGCATG
TCCCACCATCAAGCACTGTAACATCAGTGACTGTGAAAATGTTGGACTATATATAACAGATCATGCACAG
GGAATATATGAGGATAATGAAATTTCCAATAATGCGTTAGCTGGGATTTGGGTTAAAAATCATGGAAACC
CAATTATTAGACGGAATCATATTCATCATGGACGTGATGTTGGTGTGTTCACATTTGATCATGGCATGGG
TTACTTTGAAAGTTGCAATATACACAGAAATAGGATAGCAGGCTTTGAAGTAAAAGCCTATGCTAACCCT
ACAGTGGTTCGATGTGAAATTCACCATGGGCAGACTGGAGGAATATATGTCCATGAAAAAGGAAGAGGAC
AATTCATAGAGAATAAAATCTATGCAAACAACTTTGCAGGTGTATGGATTACCTCAAATAGTGACCCAAC
AATAAGGGGAAATTCTATATTTAATGGAAATCAAGGAGGAGTTTACATCTTTGGTGATGGACGAGGCCTT
ATTGAAGGAAATGACATTTATGGCAATGCATTAGCAGGAATTCAAATTAGGACAAACAGTTGTCCAATTG
TTCGGCATAACAAAATTCATGATGGCCAGCATGGTGGGATTTATGTGCATGAAAAGGGACAAGGAGTAAT
AGAAGAGAATGAAGTTTATAGTAACACTCTAGCTGGAGTCTGGGTGACAACTGGCAGCACTCCAGTACTG
AGAAGAAACCGGATACACAGTGGCAAGCAGGTTGGTGTTTATTTTTATGACAATGGACATGGAGTGCTAG
AAGACAATGATATCTATAATCATATGTATTCAGGGGTTCAGATAAGGACTGGAAGCAACCCCAAAATTAG
ACGCAACAAAATCTGGGGAGGACAGAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGGCTGTATAGAA
GACAATGAAATATTTGACAATGCAATGGCTGGAGTCTGGATTAAGACAGATAGTAATCCTACACTAAGAA
GAAATAAAATCCATGATGGAAGAGATGGTGGCATCTGTATATTTAATGGGGGTCGAGGTCTCCTTGAAGA
AAATGATATTTTCAGGAATGCTCAAGCAGGTGTTCTCATCAGCACTAATAGTCATCCAATCTTAAGGAAA
AACAGAATATTTGATGGATTTGCCGCAGGTATTGAAATTACAAATCACGCAACTGCAACACTAGAAGGCA
ATCAGATTTTTAACAACCGGTTTGGAGGCTTATTTTTAGCATCTGGTGTTAATGTGACAATGAAAGATAA
CAAAATAATGAACAATCAAGATGCCATAGAAAAGGCTGTTAGTAGAGGCCAATGTTTATATAAAATATCA
AGTTATACCAGCTATCCCATGCATGATTTCTACAGATGTCATACTTGTAACACCACAGATCGAAATGCCA
TATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATGTAGAGTTTATTAGACATGATAGGTTTTT
CTGTGACTGTGGTGCTGGAACACTGTCTAATCCTTGTACATTAGCTGGTGAGCCTACACATGATACAGAT
ACACTATATGACTCTGCTCCACCTATAGAATCTAATACATTGCAGCACAACTGA

Translation (927 aa):
MNSVRAANRRPRRVSRPRPVQQQQQQPPQQPPPQPPQQQPPQQQPPPPPQQQQQQQPPPPPPPPPPLPQE
RNNVGERDDDVPADMVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVS
GKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPM
MHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQ
EAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNP
DDKSAQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQ
GIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANP
TVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGL
IEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVL
RRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIE
DNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRK
NRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKIS
SYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTLAGEPTHDTD
TLYDSAPPIESNTLQHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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