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Report for CCDS50874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50874.1 Public Mus musculus 3 Nlgn1 23 108 98 CCDS HistoryNCBI Gene:192167Re-query CCDS DB by CCDS ID:50874.1Re-query CCDS DB by GeneID:192167See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108308.9 ENSMUSP00000103944.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108308.9Link to Ensembl Protein Viewer:ENSMUSP00000103944.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108308Re-query CCDS DB by Protein ID:ENSMUSP00000103944
Original member Current member EBI ENSMUST00000191835.1 ENSMUSP00000142086.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191835.1Link to Ensembl Protein Viewer:ENSMUSP00000142086.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191835Re-query CCDS DB by Protein ID:ENSMUSP00000142086
Original member Current member NCBI NM_001163387.2 NP_001156859.1 Accepted alive Link to Nucleotide Sequence:NM_001163387.2Link to Protein Sequence:NP_001156859.1Re-query CCDS DB by Nucleotide ID:NM_001163387Re-query CCDS DB by Protein ID:NP_001156859Link to BLAST:NP_001156859.1

Chromosomal Locations for CCDS 50874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 25433638 25434460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25435853 25436642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25439892 25440077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25912642 25912794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 26133242 26133734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGGCACTTCCCAGATGCATGTGGCCAAATTATGTTTGGAGAGCTATGATGGCATGTGTGGTCCACAGGG
GATCCGGTGCCCCATTGACTCTCTGCTTGTTGGGATGTTTGCTACAGACTTTTCACGTACTCTCTCAAAA
GTTGGATGATGTAGACCCATTGGTTACTACTAACTTTGGCAAGATTAGGGGAATTAAGAAAGAACTCAAT
AATGAAATTTTGGGTCCTGTCATTCAGTTTCTTGGGGTTCCATATGCCGCTCCACCAACAGGAGAACATC
GTTTCCAGCCTCCAGAACCACCATCTCCCTGGTCTGACATCCGGAACGCCACTCAGTTTGCTCCTGTATG
TCCCCAGAATATCATTGATGGCAGATTGCCTGAAGTTATGCTTCCTGTGTGGTTCACTAATAACTTGGAT
GTGGTTTCATCATACGTCCAAGACCAGAGTGAAGACTGTCTATACTTAAACATCTATGTCCCAACTGAAG
ATGATATTCGGGACAGTGGGGGTCCCAAACCAGTGATGGTGTACATCCATGGCGGCTCTTACATGGAAGG
TACTGGAAATCTGTATGATGGGAGTGTCTTGGCAAGCTATGGCAATGTGATCGTCATCACAGTCAACTAT
CGGCTTGGGGTACTTGGCTTCTTGAGCACAGGGGATCAGGCTGCCAAAGGAAACTACGGGCTCCTTGACC
TCATCCAGGCCCTAAGATGGACCAGCGAGAACATTGGGTTCTTTGGTGGTGACCCCTTGCGAATCACTGT
GTTTGGATCAGGCGCTGGGGGTTCATGTGTCAACCTGCTGACTTTATCCCATTATTCTGAAGGACTTTTT
CAACGAGCAATAGCTCAGAGTGGAACAGCCCTTTCCAGCTGGGCTGTTAGTTTCCAGCCTGCAAAATACG
CTAGAATTCTGGCCACAAAAGTTGGCTGCAATGTTTCAGATACAGTAGAGTTAGTAGAATGCCTGCAGAA
GAAGCCTTACAAAGAACTTGTTGATCAAGATGTTCAACCAGCCCGATACCACATAGCCTTTGGACCTGTG
ATCGATGGTGATGTAATACCAGATGACCCTCAGATACTGATGGAACAAGGAGAGTTCCTCAACTATGATA
TAATGTTGGGAGTTAACCAAGGGGAAGGGTTGAAGTTTGTCGAAAATATAGTAGATAGTGATGATGGTGT
ATCAGCCAGTGATTTCGACTTTGCTGTTTCTAATTTTGTTGATAATTTATATGGATATCCTGAAGGCAAA
GATGTTTTGAGAGAAACCATTAAATTCATGTATACTGACTGGGCTGATCGCCATAATCCTGAAACTAGAA
GGAAGACATTGTTGGCTTTGTTTACGGACCATCAATGGGTAGCACCTGCTGTGGCCACAGCAGACCTTCA
CTCGAACTTTGGCTCACCTACATACTTCTATGCCTTTTATCATCATTGCCAAACAGATCAAGTTCCAGCT
TGGGCTGATGCAGCTCATGGGGATGAGGTTCCCTATGTGTTGGGAATCCCCATGATTGGCCCTACAGAGT
TATTTCCTTGCAATTTCTCCAAGAATGATGTGATGTTGAGTGCAGTAGTAATGACATACTGGACGAATTT
TGCTAAAACTGGTGACCCAAATCAACCAGTTCCTCAAGACACAAAATTCATCCATACCAAACCCAACCGC
TTTGAAGAAGTAGCATGGACCAGATATTCCCAGAAAGACCAGCTTTATCTCCATATTGGATTAAAACCGA
GAGTTAAAGAGCATTACAGAGCCAATAAGGTAAATCTCTGGCTGGAGCTGGTACCTCATCTGCATAATCT
CAATGACATTTCTCAGTATACCTCGACAACAACTAAAGTGCCATCCACGGACATCACTCTCAGACCTACA
AGGAAGAATTCCACACCAGTCACATCAGCCTTTCCCACTGCCAAACAGGATGATCCCAAGCAACAACCAA
GCCCCTTCTCGGTGGATCAGAGGGACTACTCCACAGAGCTAAGTGTCACTATCGCAGTGGGGGCCTCTCT
GCTGTTTCTCAACATCTTGGCTTTTGCAGCCCTGTACTACAAGAAGGATAAGAGGAGACATGATGTCCAC
CGGAGGTGCAGCCCTCAGCGCACGACCACCAACGACCTAACCCATGCTCCAGAAGAGGAAATTATGTCTC
TCCAAATGAAGCACACTGACTTGGATCACGAGTGTGAGTCCATCCATCCACATGAGGTGGTTCTTCGGAC
CGCCTGTCCCCCAGATTATACTCTAGCTATGAGGAGGTCACCTGATGATATTCCACTAATGACACCTAAC
ACCATCACAATGATTCCCAACACTATACCAGGGATTCAGCCCTTACATACATTCAACACATTTACTGGAG
GACAGAATAATACACTGCCCCATCCCCACCCACACCCCCATTCACATTCAACAACCAGGGTATAG

Translation (814 aa):
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGIKKELN
NEILGPVIQFLGVPYAAPPTGEHRFQPPEPPSPWSDIRNATQFAPVCPQNIIDGRLPEVMLPVWFTNNLD
VVSSYVQDQSEDCLYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNY
RLGVLGFLSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEGLF
QRAIAQSGTALSSWAVSFQPAKYARILATKVGCNVSDTVELVECLQKKPYKELVDQDVQPARYHIAFGPV
IDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGLKFVENIVDSDDGVSASDFDFAVSNFVDNLYGYPEGK
DVLRETIKFMYTDWADRHNPETRRKTLLALFTDHQWVAPAVATADLHSNFGSPTYFYAFYHHCQTDQVPA
WADAAHGDEVPYVLGIPMIGPTELFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPNR
FEEVAWTRYSQKDQLYLHIGLKPRVKEHYRANKVNLWLELVPHLHNLNDISQYTSTTTKVPSTDITLRPT
RKNSTPVTSAFPTAKQDDPKQQPSPFSVDQRDYSTELSVTIAVGASLLFLNILAFAALYYKKDKRRHDVH
RRCSPQRTTTNDLTHAPEEEIMSLQMKHTDLDHECESIHPHEVVLRTACPPDYTLAMRRSPDDIPLMTPN
TITMIPNTIPGIQPLHTFNTFTGGQNNTLPHPHPHPHSHSTTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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