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Report for CCDS35191.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35191.1 Public Homo sapiens XY CSF2RA 24 110 108 CCDS HistoryNCBI Gene:1438Re-query CCDS DB by CCDS ID:35191.1Re-query CCDS DB by GeneID:1438See the combined annotation on chromosome X in Sequence ViewerSee the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35191.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381524.8 ENSP00000370935.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381524.8Link to Ensembl Protein Viewer:ENSP00000370935.3Re-query CCDS DB by Nucleotide ID:ENST00000381524Re-query CCDS DB by Protein ID:ENSP00000370935
Original member Current member EBI ENST00000381529.9 ENSP00000370940.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381529.9Link to Ensembl Protein Viewer:ENSP00000370940.3Re-query CCDS DB by Nucleotide ID:ENST00000381529Re-query CCDS DB by Protein ID:ENSP00000370940
Original member Current member EBI ENST00000432318.8 ENSP00000416437.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432318.8Link to Ensembl Protein Viewer:ENSP00000416437.2Re-query CCDS DB by Nucleotide ID:ENST00000432318Re-query CCDS DB by Protein ID:ENSP00000416437
Original member Current member NCBI NM_001161529.2 NP_001155001.1 Accepted alive Link to Nucleotide Sequence:NM_001161529.2Link to Protein Sequence:NP_001155001.1Re-query CCDS DB by Nucleotide ID:NM_001161529Re-query CCDS DB by Protein ID:NP_001155001Link to BLAST:NP_001155001.1
Original member Current member NCBI NM_001379156.1 NP_001366085.1 Accepted alive Link to Nucleotide Sequence:NM_001379156.1Link to Protein Sequence:NP_001366085.1Re-query CCDS DB by Nucleotide ID:NM_001379156Re-query CCDS DB by Protein ID:NP_001366085Link to BLAST:NP_001366085.1
Original member Current member NCBI NM_001379158.1 NP_001366087.1 Accepted alive Link to Nucleotide Sequence:NM_001379158.1Link to Protein Sequence:NP_001366087.1Re-query CCDS DB by Nucleotide ID:NM_001379158Re-query CCDS DB by Protein ID:NP_001366087Link to BLAST:NP_001366087.1
Original member Current member NCBI NM_006140.6 NP_006131.2 Accepted alive Link to Nucleotide Sequence:NM_006140.6Link to Protein Sequence:NP_006131.2Re-query CCDS DB by Nucleotide ID:NM_006140Re-query CCDS DB by Protein ID:NP_006131Link to BLAST:NP_006131.2
Original member Current member NCBI NM_172245.4 NP_758448.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172245.4Link to Protein Sequence:NP_758448.1Re-query CCDS DB by Nucleotide ID:NM_172245Re-query CCDS DB by Protein ID:NP_758448Link to BLAST:NP_758448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155001.1 400 P15509-1 400 100% 0 0
NP_001366085.1 400 P15509-1 400 100% 0 0
NP_001366087.1 400 P15509-1 400 100% 0 0
NP_006131.2 400 P15509-1 400 100% 0 0
NP_758448.1 400 P15509-1 400 100% 0 0

Chromosomal Locations for CCDS 35191.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11) On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
X 1282704 1282779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1285778 1285920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1288519 1288642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1288759 1288888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1290337 1290509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1294328 1294461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1295427 1295456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1300491 1300626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1303923 1304019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1305446 1305527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1309402 1309479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

Chromosome Start Stop Links
Y 1282704 1282779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1285778 1285920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1288519 1288642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1288759 1288888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1290337 1290509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1294328 1294461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1295427 1295456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1300491 1300626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1303923 1304019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1305446 1305527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1309402 1309479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGCTTCTCCTGGTGACAAGCCTTCTGCTCTGTGAGTTACCACACCCAGCATTCCTCCTGATCCCAGAGA
AATCGGATCTGCGAACAGTGGCACCAGCCTCTAGTCTCAATGTGAGGTTTGACTCCAGGACGATGAATTT
AAGCTGGGACTGCCAAGAAAACACAACCTTCAGCAAGTGTTTCTTAACTGACAAGAAGAACAGAGTCGTG
GAACCCAGGCTCAGTAACAACGAATGTTCGTGCACATTTCGTGAAATTTGTCTGCATGAAGGAGTCACAT
TTGAGGTTCACGTGAATACTAGTCAAAGAGGATTTCAACAGAAACTGCTTTATCCAAATTCAGGAAGGGA
GGGTACCGCTGCTCAGAATTTCTCCTGTTTCATCTACAATGCGGATTTAATGAACTGTACCTGGGCGAGG
GGTCCGACGGCCCCCCGTGACGTCCAGTATTTTTTGTACATACGAAACTCAAAGAGAAGGAGGGAGATCC
GGTGTCCTTATTACATACAAGACTCAGGAACCCATGTGGGATGTCACCTGGATAACCTGTCAGGATTAAC
GTCTCGCAATTACTTTCTGGTTAACGGAACCAGCCGAGAAATTGGCATCCAATTCTTTGATTCACTTTTG
GACACAAAGAAAATAGAACGATTCAACCCTCCCAGCAATGTCACCGTACGTTGCAACACGACGCACTGCC
TCGTACGGTGGAAACAGCCCAGGACCTATCAGAAGCTGTCGTACCTGGACTTTCAGTACCAGCTGGACGT
CCACAGAAAGAATACCCAGCCTGGCACGGAAAACCTACTGATTAATGTTTCTGGTGATTTGGAAAATAGA
TACAACTTTCCAAGCTCTGAGCCCAGAGCAAAACACAGTGTGAAGATCAGAGCTGCAGACGTCCGCATCT
TGAATTGGAGCTCCTGGAGTGAAGCCATTGAATTTGGTTCTGACGACGGGAACCTCGGCTCTGTGTACAT
TTATGTGCTCCTAATCGTGGGAACCCTTGTCTGTGGCATCGTCCTCGGCTTCCTCTTTAAAAGGTTCCTT
AGGATACAGCGGCTGTTCCCGCCAGTTCCACAGATCAAAGACAAACTGAATGATAACCATGAGGTGGAAG
ACGAGATCATCTGGGAGGAATTCACCCCAGAGGAAGGGAAAGGCTACCGCGAAGAGGTCTTGACCGTGAA
GGAAATTACCTGA

Translation (400 aa):
MLLLVTSLLLCELPHPAFLLIPEKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVV
EPRLSNNECSCTFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWAR
GPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREIGIQFFDSLL
DTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENR
YNFPSSEPRAKHSVKIRAADVRILNWSSWSEAIEFGSDDGNLGSVYIYVLLIVGTLVCGIVLGFLFKRFL
RIQRLFPPVPQIKDKLNDNHEVEDEIIWEEFTPEEGKGYREEVLTVKEIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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