NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3177.1 Public Homo sapiens 3 TIPARP 24 110 108 CCDS HistoryNCBI Gene:25976Re-query CCDS DB by CCDS ID:3177.1Re-query CCDS DB by GeneID:25976See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295924.12 ENSP00000295924.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295924.12Link to Ensembl Protein Viewer:ENSP00000295924.7Re-query CCDS DB by Nucleotide ID:ENST00000295924Re-query CCDS DB by Protein ID:ENSP00000295924
Original member Current member EBI ENST00000486483.5 ENSP00000418757.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000486483.5Link to Ensembl Protein Viewer:ENSP00000418757.1Re-query CCDS DB by Nucleotide ID:ENST00000486483Re-query CCDS DB by Protein ID:ENSP00000418757
Original member Current member EBI ENST00000461166.5 ENSP00000420612.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461166.5Link to Ensembl Protein Viewer:ENSP00000420612.1Re-query CCDS DB by Nucleotide ID:ENST00000461166Re-query CCDS DB by Protein ID:ENSP00000420612
Original member Current member EBI ENST00000542783.5 ENSP00000438345.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542783.5Link to Ensembl Protein Viewer:ENSP00000438345.1Re-query CCDS DB by Nucleotide ID:ENST00000542783Re-query CCDS DB by Protein ID:ENSP00000438345
Original member Current member NCBI NM_001184717.1 NP_001171646.1 Accepted alive Link to Nucleotide Sequence:NM_001184717.1Link to Protein Sequence:NP_001171646.1Re-query CCDS DB by Nucleotide ID:NM_001184717Re-query CCDS DB by Protein ID:NP_001171646Link to BLAST:NP_001171646.1
Original member Current member NCBI NM_001184718.2 NP_001171647.1 Accepted alive Link to Nucleotide Sequence:NM_001184718.2Link to Protein Sequence:NP_001171647.1Re-query CCDS DB by Nucleotide ID:NM_001184718Re-query CCDS DB by Protein ID:NP_001171647Link to BLAST:NP_001171647.1
Original member Current member NCBI NM_015508.5 NP_056323.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015508.5Link to Protein Sequence:NP_056323.2Re-query CCDS DB by Nucleotide ID:NM_015508Re-query CCDS DB by Protein ID:NP_056323Link to BLAST:NP_056323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171646.1 657 Q7Z3E1 657 100% 0 0
NP_001171647.1 657 Q7Z3E1 657 100% 0 0
NP_056323.2 657 Q7Z3E1 657 100% 0 0

Chromosomal Locations for CCDS 3177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 156677698 156678614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156694020 156694188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156695865 156696025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156703424 156703702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156704684 156705131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGAAATGGAAACCACCGAACCTGAGCCAGACTGTGTAGTGCAGCCTCCCTCTCCTCCTGATGACTTTT
CATGCCAAATGAGACTCTCTGAGAAGATCACTCCATTGAAGACTTGTTTTAAGAAAAAGGATCAGAAAAG
ATTGGGAACTGGAACCCTGAGGTCTTTGAGGCCAATATTAAACACTCTTCTAGAATCTGGCTCACTTGAT
GGGGTTTTTAGATCTAGGAACCAGAGTACAGATGAGAACAGCTTACATGAACCTATGATGAAGAAAGCCA
TGGAAATCAATTCATCATGCCCACCAGCAGAAAATAATATGTCTGTTCTGATTCCTGATAGGACAAATGT
TGGGGACCAGATACCGGAAGCCCATCCTTCCACTGAAGCTCCAGAACGAGTGGTTCCAATCCAAGATCAC
AGCTTTCCATCAGAAACCCTCAGTGGGACGGTGGCAGATTCCACACCAGCTCACTTCCAGACTGATCTTT
TGCACCCAGTTTCAAGTGATGTTCCTACTAGTCCTGACTGCTTAGACAAAGTCATAGATTATGTTCCAGG
CATTTTCCAAGAAAACAGTTTTACAATCCAATACATTCTGGACACCAGTGATAAGCTGAGTACTGAGCTC
TTTCAGGACAAAAGTGAAGAGGCTTCCCTTGACCTCGTGTTTGAGCTGGTGAACCAGTTGCAGTACCACA
CTCACCAAGAGAACGGAATTGAAATTTGCATGGACTTTCTGCAAGGCACTTGTATTTATGGCAGGGATTG
TTTGAAGCACCACACTGTCTTGCCATATCATTGGCAGATCAAAAGGACAACTACTCAAAAGTGGCAGAGT
GTATTCAATGATTCTCAGGAGCACTTGGAAAGATTTTACTGTAACCCAGAAAATGATAGAATGAGAATGA
AGTATGGAGGACAAGAATTTTGGGCAGATTTGAATGCCATGAACGTGTATGAAACAACTGAATTTGACCA
ACTACGAAGGCTGTCCACACCACCCTCTAGCAATGTCAACTCTATTTACCACACAGTCTGGAAATTCTTC
TGTAGGGACCACTTTGGATGGAGAGAGTATCCCGAGTCTGTCATTCGATTGATTGAAGAAGCCAACTCTC
GGGGTCTGAAAGAGGTTCGATTTATGATGTGGAATAACCACTACATCCTCCACAATTCATTCTTCAGGAG
AGAGATAAAAAGGAGACCCCTCTTCCGCTCCTGTTTTATACTGCTTCCATATTTACAGACACTTGGTGGG
GTTCCCACACAAGCTCCTCCACCTCTTGAAGCAACTTCATCATCACAAATTATCTGCCCAGATGGGGTCA
CTTCAGCAAACTTTTACCCTGAAACTTGGGTTTATATGCATCCATCTCAGGACTTCATCCAAGTCCCTGT
TTCTGCAGAGGATAAAAGTTATCGGATCATTTACAATCTTTTTCATAAGACTGTGCCTGAGTTTAAATAC
AGAATTTTGCAGATATTGAGAGTCCAAAACCAGTTTCTTTGGGAGAAATATAAAAGGAAAAAGGAATATA
TGAACAGGAAAATGTTTGGCCGTGACAGGATAATAAATGAGAGACATTTATTTCATGGAACATCCCAGGA
TGTGGTAGATGGAATCTGCAAACACAACTTTGACCCTCGAGTCTGTGGAAAGCATGCTACAATGTTTGGA
CAAGGCAGTTATTTTGCAAAGAAGGCAAGCTACTCTCATAACTTTTCTAAGAAGTCCTCCAAAGGAGTCC
ACTTCATGTTTCTGGCCAAAGTGCTGACGGGCAGATACACAATGGGCAGTCATGGCATGAGAAGGCCCCC
GCCAGTCAATCCTGGCAGTGTCACCAGTGACCTTTATGACTCTTGTGTGGATAATTTCTTTGAGCCTCAG
ATTTTTGTCATTTTTAATGATGACCAGAGTTACCCTTATTTTGTTATCCAATATGAAGAAGTCAGTAACA
CTGTTTCCATTTGA

Translation (657 aa):
MEMETTEPEPDCVVQPPSPPDDFSCQMRLSEKITPLKTCFKKKDQKRLGTGTLRSLRPILNTLLESGSLD
GVFRSRNQSTDENSLHEPMMKKAMEINSSCPPAENNMSVLIPDRTNVGDQIPEAHPSTEAPERVVPIQDH
SFPSETLSGTVADSTPAHFQTDLLHPVSSDVPTSPDCLDKVIDYVPGIFQENSFTIQYILDTSDKLSTEL
FQDKSEEASLDLVFELVNQLQYHTHQENGIEICMDFLQGTCIYGRDCLKHHTVLPYHWQIKRTTTQKWQS
VFNDSQEHLERFYCNPENDRMRMKYGGQEFWADLNAMNVYETTEFDQLRRLSTPPSSNVNSIYHTVWKFF
CRDHFGWREYPESVIRLIEEANSRGLKEVRFMMWNNHYILHNSFFRREIKRRPLFRSCFILLPYLQTLGG
VPTQAPPPLEATSSSQIICPDGVTSANFYPETWVYMHPSQDFIQVPVSAEDKSYRIIYNLFHKTVPEFKY
RILQILRVQNQFLWEKYKRKKEYMNRKMFGRDRIINERHLFHGTSQDVVDGICKHNFDPRVCGKHATMFG
QGSYFAKKASYSHNFSKKSSKGVHFMFLAKVLTGRYTMGSHGMRRPPPVNPGSVTSDLYDSCVDNFFEPQ
IFVIFNDDQSYPYFVIQYEEVSNTVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH