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Report for CCDS29076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29076.1 Public Mus musculus 18 Cdh2 23 108 98 CCDS HistoryNCBI Gene:12558Re-query CCDS DB by CCDS ID:29076.1Re-query CCDS DB by GeneID:12558See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025166.13 ENSMUSP00000025166.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025166.13Link to Ensembl Protein Viewer:ENSMUSP00000025166.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025166Re-query CCDS DB by Protein ID:ENSMUSP00000025166
Original member Current member NCBI NM_007664.5 NP_031690.3 Accepted alive Link to Nucleotide Sequence:NM_007664.5Link to Protein Sequence:NP_031690.3Re-query CCDS DB by Nucleotide ID:NM_007664Re-query CCDS DB by Protein ID:NP_031690Link to BLAST:NP_031690.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031690.3 906 P15116 906 100% 0 0

Chromosomal Locations for CCDS 29076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 16590147 16590353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16601622 16601786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16622128 16622267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16624151 16624384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16624720 16624953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16627568 16627710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16629459 16629712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16632204 16632389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16633008 16633145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16640422 16640594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16643930 16644074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16646472 16646627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16648487 16648633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16650272 16650498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16774508 16774619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 16808335 16808394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2721 nt):
ATGTGCCGGATAGCGGGAGCGCCGCGGACCCTGCTGCCGCTTCTGGCGGCCTTGCTTCAGGCGTCTGTGG
AGGCTTCTGGTGAAATTGCATTATGCAAGACTGGATTTCCTGAAGATGTTTACAGCGCAGTCTTACCGAA
GGATGTGCACGAAGGACAGCCCCTTCTCAATGTGAAATTCAGCAACTGCAATAGAAAAAGGAAAGTTCAG
TATGAAAGCAGCGAGCCAGCAGATTTCAAGGTGGACGAGGACGGCACGGTGTATGCTGTGAGAAGCTTCC
CTCTCACTGCAGAGCAGGCAAAGTTCCTGATATATGCCCAAGACAAAGAAACCCAGGAAAAGTGGCAGGT
AGCTGTAAACCTGAGCCGGGAGCCAACCCTGACTGAGGAGCCTATGAAGGAACCACATGAAATTGAAGAA
ATAGTATTCCCTAGACAACTTGCCAAGCACAGTGGAGCTCTACAAAGGCAGAAGAGAGACTGGGTCATCC
CGCCAATCAACTTGCCAGAAAACTCCAGAGGACCCTTTCCTCAAGAGCTTGTCAGAATCAGGTCTGATAG
AGATAAAAACCTTTCCCTGAGATACAGCGTCACTGGGCCAGGAGCTGACCAGCCTCCAACGGGCATCTTC
ATTATCAACCCCATCTCAGGACAGCTGTCAGTCACAAAGCCTCTGGATCGAGAGCTGATAGCCCGGTTTC
ACTTGAGAGCACATGCAGTGGACATCAATGGCAATCAAGTGGAGAACCCCATTGACATTGTCATCAATGT
TATTGACATGAATGATAACAGACCTGAGTTTCTGCACCAGGTTTGGAATGGGTCTGTTCCAGAGGGATCA
AAGCCTGGGACGTATGTGATGACGGTCACTGCCATTGATGCGGATGATCCAAATGCCCTGAATGGAATGC
TGCGGTACAGGATCCTGTCCCAGGCGCCCAGCACACCTTCACCCAACATGTTTACAATCAACAATGAGAC
TGGGGACATCATCACTGTGGCAGCTGGTCTGGATCGAGAGAAAGTGCAACAGTATACGTTAATAATTCAA
GCCACAGACATGGAAGGCAATCCCACTTATGGCCTTTCAAACACAGCCACAGCCGTCATCACGGTGACAG
ATGTCAATGACAATCCTCCAGAGTTTACTGCCATGACTTTCTACGGAGAAGTCCCTGAGAACAGGGTGGA
CGTCATTGTAGCCAACCTAACTGTCACGGACAAAGATCAGCCCCACACGCCGGCCTGGAATGCGGCATAC
AGAATCAGTGGTGGAGACCCTACAGGAAGGTTTGCCATCCTGACAGACCCCAACAGCAATGATGGGCTAG
TCACAGTGGTAAAACCAATTGACTTTGAAACGAATAGGATGTTTGTCCTTACTGTTGCTGCAGAAAACCA
AGTGCCATTAGCTAAAGGCATTCAGCACCCACCTCAGTCGACAGCCACTGTGTCTGTGACAGTTATTGAT
GTCAATGAAAATCCTTATTTTGCCCCAAATCCTAAAATCATTCGCCAAGAGGAAGGCCTCCACGCAGGTA
CCATGCTGACCACGCTCACTGCTCAGGACCCCGATCGATATATGCAACAGAATATCAGATACACAAAATT
GTCTGATCCTGCCAACTGGCTGAAAATAGACCCCGTGAATGGGCAGATCACTACTATTGCCGTTTTGGAC
AGAGAATCGCCAAATGTAAAAAACAACATCTATAATGCTACCTTCCTTGCTTCTGACAATGGAATCCCGC
CTATGAGTGGGACAGGAACACTGCAAATCTATTTACTTGATATCAATGACAACGCCCCTCAGGTGTTACC
TCAAGAGGCGGAGACCTGTGAAACTCCAGAACCCAACTCAATTAACATCACAGCACTTGATTATGACATA
GACCCAAACGCCGGGCCGTTCGCGTTTGATCTTCCCTTATCTCCAGTGACTATTAAAAGAAACTGGACCA
TCAACCGGCTTAATGGTGATTTTGCTCAGCTCAATTTAAAGATAAAATTTTTGGAAGCTGGTATCTATGA
AGTTCCCATCATTATCACAGATTCAGGGAATCCCCCCAAGTCCAACATTTCCATCCTGCGTGTGAAAGTT
TGTCAGTGTGACTCCAATGGAGACTGCACGGACGTGGACAGGATCGTGGGTGCAGGGCTTGGCACGGGCG
CCATCATCGCTATCCTTCTGTGTATCATCATCCTGCTGATCCTTGTTCTCATGTTTGTGGTATGGATGAA
ACGGCGGGATAAAGAGCGCCAAGCCAAGCAGCTTTTAATTGACCCAGAAGATGATGTAAGAGATAATATA
TTGAAATATGATGAAGAAGGTGGAGGAGAAGAAGACCAGGACTATGACTTGAGCCAGCTCCAGCAACCAG
ATACTGTGGAGCCTGATGCCATCAAGCCCGTGGGAATCAGACGGCTAGACGAGAGGCCTATCCATGCTGA
GCCACAGTACCCAGTCCGATCCGCAGCCCCACACCCTGGGGATATTGGGGACTTCATTAATGAGGGCCTT
AAAGCTGCTGACAACGACCCCACGGCGCCACCGTATGACTCCCTCTTAGTCTTTGACTACGAGGGCAGCG
GCTCCACGGCTGGCTCCTTGAGCTCCCTCAACTCCTCCAGTAGCGGTGGGGACCAGGACTATGACTACCT
GAATGACTGGGGACCCCGCTTCAAGAAACTGGCGGACATGTACGGCGGTGGTGACGACTGA

Translation (906 aa):
MCRIAGAPRTLLPLLAALLQASVEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQ
YESSEPADFKVDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEE
IVFPRQLAKHSGALQRQKRDWVIPPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIF
IINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGS
KPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQ
ATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAY
RISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVID
VNENPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLD
RESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEPNSINITALDYDI
DPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKV
CQCDSNGDCTDVDRIVGAGLGTGAIIAILLCIIILLILVLMFVVWMKRRDKERQAKQLLIDPEDDVRDNI
LKYDEEGGGEEDQDYDLSQLQQPDTVEPDAIKPVGIRRLDERPIHAEPQYPVRSAAPHPGDIGDFINEGL
KAADNDPTAPPYDSLLVFDYEGSGSTAGSLSSLNSSSSGGDQDYDYLNDWGPRFKKLADMYGGGDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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