NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24290.1 Public Mus musculus 10 Dgka 23 108 98 CCDS HistoryNCBI Gene:13139Re-query CCDS DB by CCDS ID:24290.1Re-query CCDS DB by GeneID:13139See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24290.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026414.8 ENSMUSP00000026414.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026414.8Link to Ensembl Protein Viewer:ENSMUSP00000026414.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026414Re-query CCDS DB by Protein ID:ENSMUSP00000026414
Original member NCBI NM_001358745.1 NP_001345674.1 Updated not alive Link to Nucleotide Sequence:NM_001358745.1Link to Protein Sequence:NP_001345674.1Re-query CCDS DB by Nucleotide ID:NM_001358745Re-query CCDS DB by Protein ID:NP_001345674
Current member NCBI NM_001358745.2 NP_001345674.1 Accepted alive Link to Nucleotide Sequence:NM_001358745.2Link to Protein Sequence:NP_001345674.1Re-query CCDS DB by Nucleotide ID:NM_001358745Re-query CCDS DB by Protein ID:NP_001345674Link to BLAST:NP_001345674.1
Original member NCBI NM_001358746.1 NP_001345675.1 Updated not alive Link to Nucleotide Sequence:NM_001358746.1Link to Protein Sequence:NP_001345675.1Re-query CCDS DB by Nucleotide ID:NM_001358746Re-query CCDS DB by Protein ID:NP_001345675
Current member NCBI NM_001358746.2 NP_001345675.1 Accepted alive Link to Nucleotide Sequence:NM_001358746.2Link to Protein Sequence:NP_001345675.1Re-query CCDS DB by Nucleotide ID:NM_001358746Re-query CCDS DB by Protein ID:NP_001345675Link to BLAST:NP_001345675.1
Original member NCBI NM_016811.3 NP_058091.2 Updated not alive Link to Nucleotide Sequence:NM_016811.3Link to Protein Sequence:NP_058091.2Re-query CCDS DB by Nucleotide ID:NM_016811Re-query CCDS DB by Protein ID:NP_058091
Current member NCBI NM_016811.4 NP_058091.2 Accepted alive Link to Nucleotide Sequence:NM_016811.4Link to Protein Sequence:NP_058091.2Re-query CCDS DB by Nucleotide ID:NM_016811Re-query CCDS DB by Protein ID:NP_058091Link to BLAST:NP_058091.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345674.1 730 O88673 730 100% 0 0
NP_001345675.1 730 O88673 730 100% 0 0
NP_058091.2 730 O88673 730 100% 0 0

Chromosomal Locations for CCDS 24290.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128720423 128720506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128720717 128720777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128720952 128721072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128721178 128721376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128722454 128722544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128723185 128723249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128723519 128723679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128728068 128728157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128728256 128728341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128729599 128729670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128729875 128729948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128730191 128730259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128730605 128730703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128731068 128731187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128731324 128731412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128732983 128733097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128733265 128733384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128733565 128733639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128734088 128734137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128735831 128735908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128736141 128736276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128736645 128736718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128737009 128737072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGGCCAAAGAGAAGGGCCTCATCAGCCCAGAAGACTTCGCTCAGCTGCAAAAGTACATAGAATACTCCA
CCAAAAGGGTCAGCGATGTACTGAAGGTCTTTGACGATGGTGAGATGAACAGATTTTGCCAGGGAGATGC
CATTGGGTACCTAGGATTTGAACAATTCATGAAAATGTATCTGGAAATGGAGGAGGTTCCCCATCACCTA
TGCTGGGCTCTGTTTTGGTCCTTCCATACTAGTCAAGTTGCGGCTGAGAAGACCAAGTCAAAAGCCAATG
TGATCTGTCTCAGTGATGTGTACTGCTACTTCACCCTCCTAGAAGGTGGCCGGCCAGAAGACAAGCTAGA
GTTCACCTTCAAGCTATATGACATGGACAGAAATGGGATCCTGGATAGCACGGAAGTGGAAAAAATCATC
CTTCAGATGATGCGAGTGGCCGAATATCTAGACTGGGATGTGTCTGAGCTGAGACCGATCCTTCAGGAGA
TGATGAGAGAGATGGATCAGGACGGCAGTGGCTCTGTGTCTCTAGACGAGTGGGTCCGTGCTGGGGCTAC
CACAGTGCCACTGCTTGTGCTCCTGGGGATGGACGTGACTATGAAAGATGATGGCAACCATATATGGAGA
CCCAAGAGATTCACCAGACTGGTCTACTGCAACCTGTGCGAACAGAGCATTAGCCTTGGCAAACAGGGCC
TGAGCTGTAACTTCTGTAAGTACATTGTTCATGACCACTGTGCCATGAAGGCCCAGCCTTGTGAAGTCAG
CACCTATGCCAAGTCTCGGAAAGACATTGGTGTCCAGTCACACTTATGGGTTCGAGGAGGCTGTCATTCC
GGGCGTTGTGACCGCTGCCAGAAAAAGATCCGGACCTACCACAGCCTAACAGGACTGCACTGTGTGTGGT
GCCACCTGGAGATCCATGATGACTGTCTGCAGGCTGTAGGTCCTGAGTGTGACTGTGGGTTGCTCCGTGA
TCATATCCTGCCTCCGTGTTCCATCTACCCCAGCGTCCTGGTATCTGGACAAGAGTGCAAACACAAGACC
ACAGATGATACAAGCCTGTGCACCCCTGAGGCTTTTCGGATTGAACCCGTTTCTAACACCCACCCCCTTC
TAGTCTTCATCAATCTTAAGAGCGGAGGCAAGCAGGGGCAGAGTGTGCTTTGGAAATTTCAGTACATTCT
GAACCCGCGGCAGGTGTTCGACCTGAAGGATGGTCCGGAGCCAGGGCTCAGATTCTTTAAAGATGTTCCT
CAGTTCCGGATATTGGTGTGTGGTGGAGATGGCACAGTAGGCTGGGTTCTAGAGACCATTGACAAAGCCA
ACTTTGCCACTGTGCCTCCCGTTGCTGTGCTGCCCCTGGGCACTGGAAATGATCTGGCTCGGTGCCTAAG
ATGGGGAAGAGGTTATGAAGGTGAGAATTTGAGAAAGATTCTCAAGGATATAGAGCTAAGTAAGGTGGTA
TATCTCGACCGATGGTTCCTGGAAGTGATTCCCCAACAAAATGGAGAAAAGAGTGATCCAGTTCCCTCTC
AAATCATCAATAACTACTTCTCCATTGGCGTGGATGCTTCTATCGCTCACCGATTCCATCTCATGAGAGA
GAAATATCCTGAGAAGTTCAATAGCAGAATGAAGAACAAGCTTTGGTACTTTGAGTTTGCCACATCTGAG
TCCATCTTCTCAACATGCAAAAAGCTGGAAGAGTCTGTAACCGTTGAGATATGCGGGAAGCTGCTGGATC
TGAGCGACCTATCCCTAGAAGGCATTGCGGTATTGAACATCCCGAGCACGCACGGTGGCTCCAACCTCTG
GGGTGACACCAAGAGACCTCATGGGGATACATGTGAGATCAACCAGGCATTGGGCAGTGCGGCCAAAATA
ATCACAGACCCCGATATCCTGAAGACCTGTGTGCCAGACATGAGTGACAAGCGGCTGGAAGTGGTAGGAA
TAGAGGGTGCAATTGAGATGGGCCAGATCTATACCAGGCTCAAGAGTGCTGGACACCGGCTGGCCAAGTG
CTCCGAGATCACATTCCAGACCACAAAAACCCTCCCCATGCAAATTGACGGGGAGCCCTGGATGCAGGCA
CCCTGTACAATCAAGATCACCCATAAGAACCAGATGCCTATGCTTATGGGTCCACCTTCCAACTCCTACA
ATTTCTTTGGCTTTTGGAGCTGA

Translation (730 aa):
MAKEKGLISPEDFAQLQKYIEYSTKRVSDVLKVFDDGEMNRFCQGDAIGYLGFEQFMKMYLEMEEVPHHL
CWALFWSFHTSQVAAEKTKSKANVICLSDVYCYFTLLEGGRPEDKLEFTFKLYDMDRNGILDSTEVEKII
LQMMRVAEYLDWDVSELRPILQEMMREMDQDGSGSVSLDEWVRAGATTVPLLVLLGMDVTMKDDGNHIWR
PKRFTRLVYCNLCEQSISLGKQGLSCNFCKYIVHDHCAMKAQPCEVSTYAKSRKDIGVQSHLWVRGGCHS
GRCDRCQKKIRTYHSLTGLHCVWCHLEIHDDCLQAVGPECDCGLLRDHILPPCSIYPSVLVSGQECKHKT
TDDTSLCTPEAFRIEPVSNTHPLLVFINLKSGGKQGQSVLWKFQYILNPRQVFDLKDGPEPGLRFFKDVP
QFRILVCGGDGTVGWVLETIDKANFATVPPVAVLPLGTGNDLARCLRWGRGYEGENLRKILKDIELSKVV
YLDRWFLEVIPQQNGEKSDPVPSQIINNYFSIGVDASIAHRFHLMREKYPEKFNSRMKNKLWYFEFATSE
SIFSTCKKLEESVTVEICGKLLDLSDLSLEGIAVLNIPSTHGGSNLWGDTKRPHGDTCEINQALGSAAKI
ITDPDILKTCVPDMSDKRLEVVGIEGAIEMGQIYTRLKSAGHRLAKCSEITFQTTKTLPMQIDGEPWMQA
PCTIKITHKNQMPMLMGPPSNSYNFFGFWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH