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Report for CCDS17268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17268.1 Public Mus musculus 3 Nlgn1 23 108 98 CCDS HistoryNCBI Gene:192167Re-query CCDS DB by CCDS ID:17268.1Re-query CCDS DB by GeneID:192167See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075054.9 ENSMUSP00000074565.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075054.9Link to Ensembl Protein Viewer:ENSMUSP00000074565.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075054Re-query CCDS DB by Protein ID:ENSMUSP00000074565
Original member Current member EBI ENSMUST00000193603.5 ENSMUSP00000142200.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193603.5Link to Ensembl Protein Viewer:ENSMUSP00000142200.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193603Re-query CCDS DB by Protein ID:ENSMUSP00000142200
Original member Current member NCBI NM_138666.4 NP_619607.2 Accepted alive Link to Nucleotide Sequence:NM_138666.4Link to Protein Sequence:NP_619607.2Re-query CCDS DB by Nucleotide ID:NM_138666Re-query CCDS DB by Protein ID:NP_619607Link to BLAST:NP_619607.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619607.2 843 Q99K10-1 843 100% 0 0

Chromosomal Locations for CCDS 17268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 25433638 25434460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25435853 25436642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25439865 25440077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25912642 25912794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25920178 25920237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 26133242 26133734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2532 nt):
ATGGCACTTCCCAGATGCATGTGGCCAAATTATGTTTGGAGAGCTATGATGGCATGTGTGGTCCACAGGG
GATCCGGTGCCCCATTGACTCTCTGCTTGTTGGGATGTTTGCTACAGACTTTTCACGTACTCTCTCAAAA
GTTGGATGATGTAGACCCATTGGTTACTACTAACTTTGGCAAGATTAGGGGAATTAAGAAAGAACTCAAT
AATGAAATTTTGGGTCCTGTCATTCAGTTTCTTGGGGTTCCATATGCCGCTCCACCAACAGGAGAACATC
GTTTCCAGCCTCCAGAACCACCATCTCCCTGGTCTGACATCCGGAACGCCACTCAGTTTGCTCCTGTATG
TCCCCAGAATATCATTGATGGCAGATTGCCTGAAGTTATGCTTCCTGTGTGGTTCACTAATAACTTGGAT
GTGGTTTCATCATACGTCCAAGACCAGAGTGAAGACTGTCTATACTTAAACATCTATGTCCCAACTGAAG
ATGGTCCCCTTACAAAGAAACACACAGATGATTTAGGTGATAATGACGGTGCTGAAGATGAAGATATTCG
GGACAGTGGGGGTCCCAAACCAGTGATGGTGTACATCCATGGCGGCTCTTACATGGAAGGTACTGGAAAT
CTGTATGATGGGAGTGTCTTGGCAAGCTATGGCAATGTGATCGTCATCACAGTCAACTATCGGCTTGGGG
TACTTGGCTTCTTGAGCACAGGGGATCAGGCTGCCAAAGGAAACTACGGGCTCCTTGACCTCATCCAGGC
CCTAAGATGGACCAGCGAGAACATTGGGTTCTTTGGTGGTGACCCCTTGCGAATCACTGTGTTTGGATCA
GGCGCTGGGGGTTCATGTGTCAACCTGCTGACTTTATCCCATTATTCTGAAGGTAACCGTTGGAGCAATT
CAACCAAAGGACTTTTTCAACGAGCAATAGCTCAGAGTGGAACAGCCCTTTCCAGCTGGGCTGTTAGTTT
CCAGCCTGCAAAATACGCTAGAATTCTGGCCACAAAAGTTGGCTGCAATGTTTCAGATACAGTAGAGTTA
GTAGAATGCCTGCAGAAGAAGCCTTACAAAGAACTTGTTGATCAAGATGTTCAACCAGCCCGATACCACA
TAGCCTTTGGACCTGTGATCGATGGTGATGTAATACCAGATGACCCTCAGATACTGATGGAACAAGGAGA
GTTCCTCAACTATGATATAATGTTGGGAGTTAACCAAGGGGAAGGGTTGAAGTTTGTCGAAAATATAGTA
GATAGTGATGATGGTGTATCAGCCAGTGATTTCGACTTTGCTGTTTCTAATTTTGTTGATAATTTATATG
GATATCCTGAAGGCAAAGATGTTTTGAGAGAAACCATTAAATTCATGTATACTGACTGGGCTGATCGCCA
TAATCCTGAAACTAGAAGGAAGACATTGTTGGCTTTGTTTACGGACCATCAATGGGTAGCACCTGCTGTG
GCCACAGCAGACCTTCACTCGAACTTTGGCTCACCTACATACTTCTATGCCTTTTATCATCATTGCCAAA
CAGATCAAGTTCCAGCTTGGGCTGATGCAGCTCATGGGGATGAGGTTCCCTATGTGTTGGGAATCCCCAT
GATTGGCCCTACAGAGTTATTTCCTTGCAATTTCTCCAAGAATGATGTGATGTTGAGTGCAGTAGTAATG
ACATACTGGACGAATTTTGCTAAAACTGGTGACCCAAATCAACCAGTTCCTCAAGACACAAAATTCATCC
ATACCAAACCCAACCGCTTTGAAGAAGTAGCATGGACCAGATATTCCCAGAAAGACCAGCTTTATCTCCA
TATTGGATTAAAACCGAGAGTTAAAGAGCATTACAGAGCCAATAAGGTAAATCTCTGGCTGGAGCTGGTA
CCTCATCTGCATAATCTCAATGACATTTCTCAGTATACCTCGACAACAACTAAAGTGCCATCCACGGACA
TCACTCTCAGACCTACAAGGAAGAATTCCACACCAGTCACATCAGCCTTTCCCACTGCCAAACAGGATGA
TCCCAAGCAACAACCAAGCCCCTTCTCGGTGGATCAGAGGGACTACTCCACAGAGCTAAGTGTCACTATC
GCAGTGGGGGCCTCTCTGCTGTTTCTCAACATCTTGGCTTTTGCAGCCCTGTACTACAAGAAGGATAAGA
GGAGACATGATGTCCACCGGAGGTGCAGCCCTCAGCGCACGACCACCAACGACCTAACCCATGCTCCAGA
AGAGGAAATTATGTCTCTCCAAATGAAGCACACTGACTTGGATCACGAGTGTGAGTCCATCCATCCACAT
GAGGTGGTTCTTCGGACCGCCTGTCCCCCAGATTATACTCTAGCTATGAGGAGGTCACCTGATGATATTC
CACTAATGACACCTAACACCATCACAATGATTCCCAACACTATACCAGGGATTCAGCCCTTACATACATT
CAACACATTTACTGGAGGACAGAATAATACACTGCCCCATCCCCACCCACACCCCCATTCACATTCAACA
ACCAGGGTATAG

Translation (843 aa):
MALPRCMWPNYVWRAMMACVVHRGSGAPLTLCLLGCLLQTFHVLSQKLDDVDPLVTTNFGKIRGIKKELN
NEILGPVIQFLGVPYAAPPTGEHRFQPPEPPSPWSDIRNATQFAPVCPQNIIDGRLPEVMLPVWFTNNLD
VVSSYVQDQSEDCLYLNIYVPTEDGPLTKKHTDDLGDNDGAEDEDIRDSGGPKPVMVYIHGGSYMEGTGN
LYDGSVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGS
GAGGSCVNLLTLSHYSEGNRWSNSTKGLFQRAIAQSGTALSSWAVSFQPAKYARILATKVGCNVSDTVEL
VECLQKKPYKELVDQDVQPARYHIAFGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGLKFVENIV
DSDDGVSASDFDFAVSNFVDNLYGYPEGKDVLRETIKFMYTDWADRHNPETRRKTLLALFTDHQWVAPAV
ATADLHSNFGSPTYFYAFYHHCQTDQVPAWADAAHGDEVPYVLGIPMIGPTELFPCNFSKNDVMLSAVVM
TYWTNFAKTGDPNQPVPQDTKFIHTKPNRFEEVAWTRYSQKDQLYLHIGLKPRVKEHYRANKVNLWLELV
PHLHNLNDISQYTSTTTKVPSTDITLRPTRKNSTPVTSAFPTAKQDDPKQQPSPFSVDQRDYSTELSVTI
AVGASLLFLNILAFAALYYKKDKRRHDVHRRCSPQRTTTNDLTHAPEEEIMSLQMKHTDLDHECESIHPH
EVVLRTACPPDYTLAMRRSPDDIPLMTPNTITMIPNTIPGIQPLHTFNTFTGGQNNTLPHPHPHPHSHST
TRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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