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Report for CCDS14978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14978.1 Public Mus musculus 1 Cflar 23 108 98 CCDS HistoryNCBI Gene:12633Re-query CCDS DB by CCDS ID:14978.1Re-query CCDS DB by GeneID:12633See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069333.7 ENSMUSP00000065107.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069333.7Link to Ensembl Protein Viewer:ENSMUSP00000065107.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069333Re-query CCDS DB by Protein ID:ENSMUSP00000065107
Original member Current member EBI ENSMUST00000114313.7 ENSMUSP00000109952.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114313.7Link to Ensembl Protein Viewer:ENSMUSP00000109952.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114313Re-query CCDS DB by Protein ID:ENSMUSP00000109952
Original member Current member NCBI NM_001289704.3 NP_001276633.1 Accepted alive Link to Nucleotide Sequence:NM_001289704.3Link to Protein Sequence:NP_001276633.1Re-query CCDS DB by Nucleotide ID:NM_001289704Re-query CCDS DB by Protein ID:NP_001276633Link to BLAST:NP_001276633.1
Original member Current member NCBI NM_207653.6 NP_997536.1 Accepted alive Link to Nucleotide Sequence:NM_207653.6Link to Protein Sequence:NP_997536.1Re-query CCDS DB by Nucleotide ID:NM_207653Re-query CCDS DB by Protein ID:NP_997536Link to BLAST:NP_997536.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276633.1 481 O35732-1 481 100% 0 0
NP_997536.1 481 O35732-1 481 100% 0 0

Chromosomal Locations for CCDS 14978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58726437 58726732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58729056 58729161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58731152 58731287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58732253 58732326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58735658 58735712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58740263 58740312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58740965 58741046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58752339 58752846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58753784 58753922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGCCCAGAGCCCTGTGTCTGCCGAGGTCATTCACCAGGTGGAAGAGTGTCTTGATGAAGACGAGAAGG
AGATGATGCTCTTCCTGTGTAGAGATGTGACTGAGAACCTGGCTGCACCTAACGTCAGGGACCTCCTGGA
TAGCTTAAGTGAGAGAGGCCAGCTCTCTTTTGCTACCTTGGCTGAATTGCTCTACAGAGTGAGGCGGTTT
GACCTTCTCAAGAGGATCTTGAAGACAGACAAAGCAACCGTGGAGGACCACCTGCGCAGAAACCCTCACC
TGGTTTCTGATTATAGGGTCCTGCTGATGGAGATTGGTGAGAGCTTAGATCAGAACGATGTATCCTCCTT
AGTTTTCCTTACAAGGGATTACACAGGCAGAGGCAAGATAGCCAAGGACAAGAGTTTCTTGGATCTGGTG
ATTGAATTGGAGAAACTGAATCTAATTGCTTCAGACCAATTGAATTTGTTAGAAAAATGCCTGAAGAACA
TCCACAGAATAGACTTGAACACAAAGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATAT
GAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGCTCCAGAATGGGCGAAGT
AAAGAGCCAAGATTTGTGGAATACCGTGACAGTCAAAGAACACTGGTGAAGACATCCATCCAGGAATCAG
GAGCTTTTTTACCTCCGCACATCCGTGAAGAGACTTACAGGATGCAGAGCAAGCCCCTAGGAATCTGCTT
GATCATTGATTGTATTGGCAACGACACAAAATATCTTCAAGAGACCTTCACTTCCCTGGGCTATCATATC
CAGCTTTTCTTGTTTCCCAAGTCACATGACATAACCCAGATTGTTCGCCGATATGCAAGTATGGCCCAAC
ATCAAGACTATGACAGCTTTGCATGTGTTCTGGTGAGCCTAGGAGGCTCCCAAAGCATGATGGGCAGAGA
TCAAGTTCACTCAGGGTTCTCCTTGGATCATGTCAAGAACATGTTCACGGGGGACACGTGCCCTTCTCTC
AGAGGGAAGCCAAAGCTCTTTTTTATTCAGAACTATGAGTCGTTAGGTAGCCAGTTGGAAGATAGCAGCC
TGGAGGTAGATGGGCCATCAATAAAAAATGTGGACTCTAAGCCCCTGCAACCCAGACACTGCACAACTCA
CCCAGAAGCTGATATCTTTTGGAGCCTGTGCACAGCAGACGTATCTCACTTGGAGAAGCCCTCCAGCTCA
TCCTCTGTGTATCTGCAGAAGCTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCGTGGACCTCC
ACGTTGAACTCATGGACAAAGTGTATGCGTGGAACAGTGGTGTTTCGTCTAAGGAGAAATACAGCCTCAG
CCTGCAGCACACTCTGAGGAAGAAACTCATCCTGGCTCCTACGTGA

Translation (481 aa):
MAQSPVSAEVIHQVEECLDEDEKEMMLFLCRDVTENLAAPNVRDLLDSLSERGQLSFATLAELLYRVRRF
DLLKRILKTDKATVEDHLRRNPHLVSDYRVLLMEIGESLDQNDVSSLVFLTRDYTGRGKIAKDKSFLDLV
IELEKLNLIASDQLNLLEKCLKNIHRIDLNTKIQKYTQSSQGARSNMNTLQASLPKLSIKYNSRLQNGRS
KEPRFVEYRDSQRTLVKTSIQESGAFLPPHIREETYRMQSKPLGICLIIDCIGNDTKYLQETFTSLGYHI
QLFLFPKSHDITQIVRRYASMAQHQDYDSFACVLVSLGGSQSMMGRDQVHSGFSLDHVKNMFTGDTCPSL
RGKPKLFFIQNYESLGSQLEDSSLEVDGPSIKNVDSKPLQPRHCTTHPEADIFWSLCTADVSHLEKPSSS
SSVYLQKLSQQLKQGRRRPLVDLHVELMDKVYAWNSGVSSKEKYSLSLQHTLRKKLILAPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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