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Report for CCDS14933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14933.1 Public Mus musculus 1 Slc40a1 23 108 98 CCDS HistoryNCBI Gene:53945Re-query CCDS DB by CCDS ID:14933.1Re-query CCDS DB by GeneID:53945See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027137.10 ENSMUSP00000027137.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027137.10Link to Ensembl Protein Viewer:ENSMUSP00000027137.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027137Re-query CCDS DB by Protein ID:ENSMUSP00000027137
Original member Current member NCBI NM_016917.2 NP_058613.2 Accepted alive Link to Nucleotide Sequence:NM_016917.2Link to Protein Sequence:NP_058613.2Re-query CCDS DB by Nucleotide ID:NM_016917Re-query CCDS DB by Protein ID:NP_058613Link to BLAST:NP_058613.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058613.2 570 Q9JHI9 570 100% 0 0

Chromosomal Locations for CCDS 14933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45909406 45909719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45910892 45911530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45912236 45912481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45918309 45918435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45918885 45919000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45921156 45921315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45924717 45924784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45925221 45925263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGACCAAGGCAAGAGATCAAACCCATCAGGAAGGATGCTGTGGATCCTTAGCAAACTACCTGACCTCAG
CAAAATTCCTCCTCTACCTTGGCCACTCTCTCTCCACTTGGGGGGATCGGATGTGGCACTTTGCAGTGTC
TGTGTTTCTGGTGGAACTCTATGGAAACAGCCTTCTCTTGACAGCTGTCTATGGACTGGTGGTGGCAGGC
TCTGTTCTGGTCCTGGGAGCCATCATTGGTGACTGGGTGGATAAGAATGCCAGACTTAAAGTGGCCCAGA
CGTCACTGGTGGTTCAGAATGTGTCCGTCATCCTCTGCGGAATCATCCTGATGATGGTTTTCCTACACAA
GAATGAGCTCCTGACCATGTACCATGGATGGGTCCTTACTGTCTGCTACATCCTGATCATCACTATTGCA
AACATTGCAAATTTGGCCAGTACTGCCACTGCGATCACAATCCAAAGGGACTGGATTGTTGTTGTGGCAG
GAGAAAACAGGAGCAGATTAGCAGACATGAATGCTACCATTAGAAGGATTGACCAGCTAACCAACATCCT
GGCCCCCATGGCTGTCGGCCAGATTATGACATTTGGTTCTCCAGTCATTGGCTGTGGTTTTATTTCCGGT
TGGAATTTGGTGTCCATGTGTGTGGAGTACTTCTTGCTCTGGAAGGTTTACCAGAAGACCCCTGCTCTGG
CTGTAAAAGCTGCTCTCAAGGTAGAGGAGTCAGAACTGAAGCAGCTGACCTCACCTAAAGATACTGAGCC
AAAACCTTTGGAGGGAACTCATCTAATGGGTGAGAAAGACTCCAACATCCGTGAACTTGAATGTGAACAA
GAGCCCACCTGTGCCTCCCAGATGGCAGAGCCCTTCCGCACTTTCCGAGATGGATGGGTCTCCTACTATA
ACCAGCCAGTGTTTCTGGCTGGCATGGGCCTGGCTTTCCTCTATATGACAGTCCTGGGCTTTGACTGTAT
CACTACAGGGTACGCCTACACTCAGGGGCTGAGTGGATCCATCCTTAGTATTTTGATGGGAGCATCAGCA
ATAACTGGAATAATGGGAACTGTGGCCTTCACCTGGCTACGTCGAAAATGTGGCCTTGTTCGGACTGGTC
TATTCTCAGGACTAGCCCAGCTTTCCTGTTTAATCTTGTGTGTGATCTCCGTATTCATGCCTGGAAGCCC
CTTGGACCTGTCTGTTTCTCCATTTGAAGATATCCGTTCTAGGTTTGTGAATGTGGAGCCAGTGTCCCCA
ACTACCAAAATACCTGAGACCGTCTTTACAACAGAAATGCATATGTCCAACATGTCTAATGTCCATGAGA
TGAGTACTAAACCCATCCCCATAGTCTCTGTCAGCCTGCTGTTTGCAGGAGTCATTGCTGCTAGAATCGG
TCTTTGGTCCTTTGATTTGACGGTGACACAGTTGCTGCAAGAAAATGTAATTGAATCTGAAAGAGGCATT
ATCAATGGTGTGCAGAACTCCATGAACTACCTTCTTGACCTTCTGCATTTCATCATGGTCATCTTGGCCC
CAAATCCTGAAGCTTTTGGCTTGCTGGTATTGATTTCAGTCTCCTTTGTGGCAATGGGACATCTTATGTA
TTTCCGATTTGCCCAGAAGACTCTGGGCAACCAGATTTTTGTTTGTGGTCCTGATGAAAAAGAAGTTACA
GATGAAAATCAACCGAATACATCTGTTGTATAA

Translation (570 aa):
MTKARDQTHQEGCCGSLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAG
SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKNELLTMYHGWVLTVCYILIITIA
NIANLASTATAITIQRDWIVVVAGENRSRLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISG
WNLVSMCVEYFLLWKVYQKTPALAVKAALKVEESELKQLTSPKDTEPKPLEGTHLMGEKDSNIRELECEQ
EPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASA
ITGIMGTVAFTWLRRKCGLVRTGLFSGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFVNVEPVSP
TTKIPETVFTTEMHMSNMSNVHEMSTKPIPIVSVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERGI
INGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHLMYFRFAQKTLGNQIFVCGPDEKEVT
DENQPNTSVV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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