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Report for CCDS14776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14776.1 Public Homo sapiens Y PCDH11Y 24 110 108 CCDS HistoryNCBI Gene:83259Re-query CCDS DB by CCDS ID:14776.1Re-query CCDS DB by GeneID:83259See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14776.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333703.8 ENSP00000330552.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000333703.8Link to Ensembl Protein Viewer:ENSP00000330552.4Re-query CCDS DB by Nucleotide ID:ENST00000333703Re-query CCDS DB by Protein ID:ENSP00000330552
Original member Current member EBI ENST00000622698.4 ENSP00000482115.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622698.4Link to Ensembl Protein Viewer:ENSP00000482115.1Re-query CCDS DB by Nucleotide ID:ENST00000622698Re-query CCDS DB by Protein ID:ENSP00000482115
Original member Current member NCBI NM_001278619.2 NP_001265548.1 Accepted alive Link to Nucleotide Sequence:NM_001278619.2Link to Protein Sequence:NP_001265548.1Re-query CCDS DB by Nucleotide ID:NM_001278619Re-query CCDS DB by Protein ID:NP_001265548Link to BLAST:NP_001265548.1
Original member Current member NCBI NM_032971.3 NP_116753.1 Accepted alive Link to Nucleotide Sequence:NM_032971.3Link to Protein Sequence:NP_116753.1Re-query CCDS DB by Nucleotide ID:NM_032971Re-query CCDS DB by Protein ID:NP_116753Link to BLAST:NP_116753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265548.1 1037 Q9BZA8-3 1037 100% 0 0
NP_116753.1 1037 Q9BZA8-3 1037 100% 0 0

Chromosomal Locations for CCDS 14776.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 5032697 5032728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5056889 5057459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5098215 5100707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5104344 5104361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3114 nt):
ATGACAGTGGGTTTTAATTCAGATATTTCAAGTGTTGTGCGGGTTAATACAACAAACTGTCACAAGTGTT
TGTTGTCCGGGACGTACATTTTCGCGGTCCTGCTAGTATGCGTGGTGTTCCACTCTGGCGCCCAGGAGAA
AAACTACACCATCCGAGAAGAAATTCCAGAAAACGTCCTGATAGGCAACTTGTTGAAAGACCTTAACTTG
TCGCTGATTCCAAACAAGTCCTTGACAACTACTATGCAGTTCAAGCTAGTGTACAAGACCGGAGATGTGC
CACTGATTCGAATTGAAGAGGATACTGGTGAGATCTTCACTACCGGCGCTCGCATTGATCGTGAGAAATT
ATGTGCTGGTATCCCAAGGGATGAGCATTGCTTTTATGAAGTGGAGGTTGCCATTTTGCCGGATGAAATA
TTTAGACTGGTTAAGATACGTTTTCTGATAGAAGATATAAATGATAATGCACCATTGTTCCCAGCAACAG
TTATCAACATATCAATTCCAGAGAACTCGGCTATAAACTCTAAATATACTCTCCCAGCGGCTGTTGATCC
TGACGTAGGCATAAACGGAGTTCAAAACTACGAACTAATTAAGAGTCAAAACATTTTTGGCCTCGATGTC
ATTGAAACACCAGAAGGAGACAAGATGCCACAACTGATTGTTCAAAAGGAGTTAGATAGGGAAGAGAAGG
ATACCTATGTGATGAAAGTAAAGGTTGAAGATGGTGGCTTTCCTCAAAGATCCAGTACTGCTATTTTGCA
AGTAAGTGTTACTGATACAAATGACAACCACCCAGTCTTTAAGGAGACAGAGATTGAAGTCAGTATACCA
GAAAATGCTCCTGTAGGCACTTCAGTGACACAGCTCCATGCCACAGATGCTGACATAGGTGAAAATGCCA
AGATCCACTTCTCTTTCAGCAATCTAGTCTCCAACATTGCCAGGAGATTATTTCACCTCAATGCCACCAC
TGGACTTATCACAATCAAAGAACCACTGGATAGGGAAGAAACACCAAACCACAAGTTACTGGTTTTGGCA
AGTGATGGTGGATTGATGCCAGCAAGAGCAATGGTGCTGGTAAATGTTACAGATGTCAATGATAATGTCC
CATCCATTGACATAAGATACATCGTCAATCCTGTCAATGACACAGTTGTTCTTTCAGAAAATATTCCACT
CAACACCAAAATTGCTCTCATAACTGTGACGGATAAGGATGCGGACCATAATGGCAGGGTGACATGCTTC
ACAGATCATGAAATTCCTTTCAGATTAAGGCCAGTATTCAGTAATCAGTTCCTCCTGGAGAATGCAGCAT
ATCTTGACTATGAGTCCACAAAAGAATATGCCATTAAATTACTGGCTGCAGATGCTGGCAAACCTCCTTT
GAATCAGTCAGCAATGCTCTTCATCAAAGTGAAAGATGAAAATGACAATGCTCCAGTTTTCACCCAGTCT
TTCGTAACTGTTTCTATTCCTGAGAATAACTCTCCTGGCATCCAGTTGATGAAAGTAAGTGCAACGGATG
CAGACAGTGGGCCTAATGCTGAGATCAATTACCTGCTAGGCCCTGATGCTCCACCTGAATTCAGCCTGGA
TCGTCGTACAGGCATGCTGACTGTAGTGAAGAAACTAGATAGAGAAAAAGAGGATAAATATTTATTCACA
ATTCTGGCAAAAGATAATGGGGTACCACCCTTAACCAGCAATGTCACAGTCTTTGTAAGCATTATTGATC
AGAATGACAATAGCCCAGTTTTCACTCACAATGAATACAAATTCTATGTCCCAGAAAACCTTCCAAGGCA
TGGTACAGTAGGACTAATCACTGTAACTGATCCTGATTATGGAGACAATTCTGCAGTTACGCTCTCCATT
TTAGATGAGAATGATGACTTCACCATTGATTCACAAACTGGTGTCATCCGACCAAATATTTCATTTGATA
GAGAAAAACAAGAATCTTACACTTTCTATGTAAAGGCTGAGGATGGTGGTAGAGTATCACGTTCTTCAAG
TGCCAAAGTAACCATAAATGTGGTTGATGTCAATGACAACAAACCAGTTTTCATTGTCCCTCCTTACAAC
TATTCTTATGAATTGGTTCTACCGTCCACTAATCCAGGCACAGTGGTCTTTCAGGTAATTGCTGTTGACA
ATGACACTGGCATGAATGCAGAGGTTCGTTACAGCATTGTAGGAGGAAACACAAGAGATCTGTTTGCAAT
CGACCAAGAAACAGGCAACATAACATTGATGGAGAAATGTGATGTTACAGACCTTGGTTTACACAGAGTG
TTGGTCAAAGCTAATGACTTAGGACAGCCTGATTCTCTCTTCAGTGTTGTAATTGTCAATCTGTTCGTGA
ATGAGTCAGTGACCAATGCTACACTGATTAATGAACTGGTGCGCAAAAGCATTGAAGCACCAGTGACCCC
AAATACTGAGATAGCTGATGTATCCTCACCAACTAGTGACTATGTCAAGATCCTGGTTGCAGCTGTTGCT
GGCACCATAACTGTCGTTGTAGTTATTTTCATCACTGCTGTAGTAAGATGTCGCCAGGCACCACACCTTA
AGGCTGCTCAGAAAAACATGCAGAATTCTGAATGGGCTACCCCAAACCCAGAAAACAGGCAGATGATAAT
GATGAAGAAAAAGAAAAAGAAGAAGAAGCATTCCCCTAAGAACCTGCTGCTTAATGTTGTCACTATTGAA
GAAACTAAGGCAGATGATGTTGACAGTGATGGAAACAGAGTCACACTAGACCTTCCTATTGATCTAGAAG
AGCAAACAATGGGAAAGTACAATTGGGTAACTACACCTACTACTTTCAAGCCTGACAGCCCTGATTTGGC
CCGACACTACAAATCTGCCTCTCCACAGCCTGCCTTCCAAATTCAGCCTGAAACTCCCCTGAATTTGAAG
CACCACATCATCCAAGAACTGCCTCTCGATAACACCTTTGTGGCCTGTGACTCTATCTCCAATTGTTCCT
CAAGCAGTTCAGATCCCTACAGCGTTTCTGACTGTGGCTATCCAGTGACAACCTTCGAGGTACCTGTGTC
CGTACACACCAGACCGACTGATTCCAGGACATGA

Translation (1037 aa):
MTVGFNSDISSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENVLIGNLLKDLNL
SLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEI
FRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDV
IETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIP
ENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLA
SDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCF
TDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQS
FVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDREKEDKYLFT
ILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSI
LDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYN
YSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRV
LVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVKILVAAVA
GTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNVVTIE
ETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNLK
HHIIQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPTDSRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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