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Report for CCDS12754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12754.1 Public Homo sapiens 19 NTF4 24 110 108 CCDS HistoryNCBI Gene:4909Re-query CCDS DB by CCDS ID:12754.1Re-query CCDS DB by GeneID:4909See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12754.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000593537.2 ENSP00000469455.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000593537.2Link to Ensembl Protein Viewer:ENSP00000469455.1Re-query CCDS DB by Nucleotide ID:ENST00000593537Re-query CCDS DB by Protein ID:ENSP00000469455
Original member Current member EBI ENST00000595857.6 ENSP00000471508.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595857.6Link to Ensembl Protein Viewer:ENSP00000471508.2Re-query CCDS DB by Nucleotide ID:ENST00000595857Re-query CCDS DB by Protein ID:ENSP00000471508
Original member Current member EBI ENST00000696088.1 ENSP00000512384.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696088.1Link to Ensembl Protein Viewer:ENSP00000512384.1Re-query CCDS DB by Nucleotide ID:ENST00000696088Re-query CCDS DB by Protein ID:ENSP00000512384
Original member Current member EBI ENST00000696089.1 ENSP00000512385.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696089.1Link to Ensembl Protein Viewer:ENSP00000512385.1Re-query CCDS DB by Nucleotide ID:ENST00000696089Re-query CCDS DB by Protein ID:ENSP00000512385
Original member Current member EBI ENST00000696090.1 ENSP00000512386.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696090.1Link to Ensembl Protein Viewer:ENSP00000512386.1Re-query CCDS DB by Nucleotide ID:ENST00000696090Re-query CCDS DB by Protein ID:ENSP00000512386
Original member Current member EBI ENST00000594938.2 ENSP00000512387.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000594938.2Link to Ensembl Protein Viewer:ENSP00000512387.1Re-query CCDS DB by Nucleotide ID:ENST00000594938Re-query CCDS DB by Protein ID:ENSP00000512387
Original member Current member EBI ENST00000696091.1 ENSP00000512388.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696091.1Link to Ensembl Protein Viewer:ENSP00000512388.1Re-query CCDS DB by Nucleotide ID:ENST00000696091Re-query CCDS DB by Protein ID:ENSP00000512388
Original member Current member NCBI NM_001395489.1 NP_001382418.1 Accepted alive Link to Nucleotide Sequence:NM_001395489.1Link to Protein Sequence:NP_001382418.1Re-query CCDS DB by Nucleotide ID:NM_001395489Re-query CCDS DB by Protein ID:NP_001382418Link to BLAST:NP_001382418.1
Original member Current member NCBI NM_006179.5 NP_006170.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006179.5Link to Protein Sequence:NP_006170.1Re-query CCDS DB by Nucleotide ID:NM_006179Re-query CCDS DB by Protein ID:NP_006170Link to BLAST:NP_006170.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001382418.1 210 P34130 210 100% 0 0
NP_006170.1 210 P34130 210 100% 0 0

Chromosomal Locations for CCDS 12754.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49061365 49061997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGCTCCCTCTCCCCTCATGCTCCCTCCCCATCCTCCTCCTTTTCCTCCTCCCCAGTGTGCCAATTGAGT
CCCAACCCCCACCCTCAACATTGCCCCCTTTTCTGGCCCCTGAGTGGGACCTTCTCTCCCCCCGAGTAGT
CCTGTCTAGGGGTGCCCCTGCTGGGCCCCCTCTGCTCTTCCTGCTGGAGGCTGGGGCCTTTCGGGAGTCA
GCAGGTGCCCCGGCCAACCGCAGCCGGCGTGGGGTGAGCGAAACTGCACCAGCGAGTCGTCGGGGTGAGC
TGGCTGTGTGCGATGCAGTCAGTGGCTGGGTGACAGACCGCCGGACCGCTGTGGACTTGCGTGGGCGCGA
GGTGGAGGTGTTGGGCGAGGTGCCTGCAGCTGGCGGCAGTCCCCTCCGCCAGTACTTCTTTGAAACCCGC
TGCAAGGCTGATAACGCTGAGGAAGGTGGCCCGGGGGCAGGTGGAGGGGGCTGCCGGGGAGTGGACAGGA
GGCACTGGGTATCTGAGTGCAAGGCCAAGCAGTCCTATGTGCGGGCATTGACCGCTGATGCCCAGGGCCG
TGTGGGCTGGCGATGGATTCGAATTGACACTGCCTGCGTCTGCACACTCCTCAGCCGGACTGGCCGGGCC
TGA

Translation (210 aa):
MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLFLLEAGAFRES
AGAPANRSRRGVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETR
CKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRALTADAQGRVGWRWIRIDTACVCTLLSRTGRA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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