NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13889.1 Public Homo sapiens 22 PLA2G3 24 110 108 CCDS HistoryNCBI Gene:50487Re-query CCDS DB by CCDS ID:13889.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13889.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215885.4 ENSP00000215885.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215885.4Link to Ensembl Protein Viewer:ENSP00000215885.3Re-query CCDS DB by Nucleotide ID:ENST00000215885Re-query CCDS DB by Protein ID:ENSP00000215885
Original member Current member NCBI NM_015715.5 NP_056530.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015715.5Link to Protein Sequence:NP_056530.2Re-query CCDS DB by Nucleotide ID:NM_015715Re-query CCDS DB by Protein ID:NP_056530Link to BLAST:NP_056530.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056530.2 509 Q9NZ20 509 100% 0 0

Chromosomal Locations for CCDS 13889.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31135723 31135936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31136683 31136799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31136908 31137040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31137710 31137993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31138276 31138410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31138667 31138799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31139841 31140354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGGGGTTCAGGCAGGGCTGTTTGGGATGCTGGGCTTCCTGGGGGTGGCCCTGGGGGGCTCCCCTGCCC
TCCGCTGGTACAGGACCTCCTGCCACTTGACCAAGGCCGTCCCTGGCAACCCACTGGGGTACCTGAGCTT
CCTGGCCAAGGATGCTCAGGGACTGGCCCTGATCCATGCCCGCTGGGATGCGCATAGGAGGCTGCAGTCA
TGTAGCTGGGAGGATGAGCCGGAGCTCACCGCAGCCTACGGTGCTCTCTGTGCTCATGAGACTGCCTGGG
GCTCCTTCATCCACACCCCCGGACCCGAGCTGCAGAGAGCACTGGCCACTCTTCAGAGTCAGTGGGAGGC
ATGCCGAGCGCTTGAGGAGAGTCCAGCAGGGGCCAGGAAGAAGCGAGCAGCAGGGCAGAGTGGAGTCCCT
GGTGGAGGGCACCAGCGAGAGAAGAGAGGATGGACCATGCCTGGCACACTGTGGTGTGGAGTTGGAGATT
CTGCTGGGAACTCCTCGGAGCTGGGGGTCTTCCAGGGACCTGATCTCTGTTGCCGGGAACATGACCGCTG
CCCACAGAACATCTCACCCTTGCAGTACAACTATGGCATCCGAAACTACCGATTCCACACCATCTCCCAC
TGTGACTGTGACACCAGGTTTCAGCAATGCCTACAGAATCAGCACGACTCCATCTCGGACATCGTGGGCG
TGGCCTTCTTCAACGTGCTGGAGATCCCCTGCTTTGTGCTGGAGGAGCAGGAGGCGTGTGTGGCGTGGTA
CTGGTGGGGCGGGTGTAGGATGTACGGCACAGTGCCCCTCGCTCGCCTGCAGCCCAGGACCTTCTACAAT
GCCTCCTGGAGCTCCCGGGCCACCTCCCCAACTCCCAGCTCCCGGAGCCCAGCCCCTCCCAAGCCTCGAC
AGAAGCAGCACCTTCGGAAGGGGCCACCACATCAGAAAGGGTCCAAGCGCCCCAGCAAAGCCAACACCAC
AGCCCTCCAGGACCCTATGGTCTCTCCCAGGCTTGATGTGGCCCCCACAGGCCTCCAGGGCCCACAGGGT
GGCCTAAAACCTCAGGGTGCCCGCTGGGTCTGCCGCAGCTTCCGCCGCCACCTGGACCAGTGTGAGCACC
AGATTGGGCCCCGGGAAATCGAGTTCCAGCTGCTCAACAGCGCCCAAGAGCCCCTCTTCCACTGCAACTG
CACGCGCCGTCTGGCACGCTTCCTGAGGCTCCACAGCCCACCCGAGGTTACCAACATGCTTTGGGAGCTG
CTGGGCACAACCTGCTTCAAGCTGGCCCCTCCACTGGACTGTGTGGAAGGCAAAAACTGTTCCAGAGACC
CTAGGGCCATCAGGGTGTCAGCCCGGCACTTGCGGAGGCTTCAGCAGAGGCGACACCAGCTCCAGGATAA
AGGCACAGATGAGAGGCAGCCATGGCCTTCAGAGCCCCTGAGAGGCCCCATGTCATTCTACAACCAGTGC
CTGCAGCTAACCCAGGCAGCCAGGAGACCCGACAGGCAGCAGAAGTCCTGGAGCCAGTGA

Translation (509 aa):
MGVQAGLFGMLGFLGVALGGSPALRWYRTSCHLTKAVPGNPLGYLSFLAKDAQGLALIHARWDAHRRLQS
CSWEDEPELTAAYGALCAHETAWGSFIHTPGPELQRALATLQSQWEACRALEESPAGARKKRAAGQSGVP
GGGHQREKRGWTMPGTLWCGVGDSAGNSSELGVFQGPDLCCREHDRCPQNISPLQYNYGIRNYRFHTISH
CDCDTRFQQCLQNQHDSISDIVGVAFFNVLEIPCFVLEEQEACVAWYWWGGCRMYGTVPLARLQPRTFYN
ASWSSRATSPTPSSRSPAPPKPRQKQHLRKGPPHQKGSKRPSKANTTALQDPMVSPRLDVAPTGLQGPQG
GLKPQGARWVCRSFRRHLDQCEHQIGPREIEFQLLNSAQEPLFHCNCTRRLARFLRLHSPPEVTNMLWEL
LGTTCFKLAPPLDCVEGKNCSRDPRAIRVSARHLRRLQQRRHQLQDKGTDERQPWPSEPLRGPMSFYNQC
LQLTQAARRPDRQQKSWSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH