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Report for CCDS4068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4068.1 Public Homo sapiens 5 NR2F1 24 110 108 CCDS HistoryNCBI Gene:7025Re-query CCDS DB by CCDS ID:4068.1Re-query CCDS DB by GeneID:7025See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4068.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327111.8 ENSP00000325819.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327111.8Link to Ensembl Protein Viewer:ENSP00000325819.3Re-query CCDS DB by Nucleotide ID:ENST00000327111Re-query CCDS DB by Protein ID:ENSP00000325819
Original member Current member NCBI NM_005654.6 NP_005645.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005654.6Link to Protein Sequence:NP_005645.1Re-query CCDS DB by Nucleotide ID:NM_005654Re-query CCDS DB by Protein ID:NP_005645Link to BLAST:NP_005645.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005645.1 423 P10589 423 100% 0 0

Chromosomal Locations for CCDS 4068.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 93585024 93585486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93587917 93588444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93593562 93593842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCAATGGTAGTTAGCAGCTGGCGAGATCCGCAGGACGACGTGGCCGGGGGCAACCCCGGCGGCCCCA
ACCCCGCAGCGCAGGCGGCCCGCGGCGGCGGCGGCGGCGCCGGCGAGCAGCAGCAGCAGGCGGGCTCGGG
CGCGCCGCACACGCCGCAGACCCCGGGCCAGCCCGGAGCGCCCGCCACCCCCGGCACGGCGGGGGACAAG
GGCCAGGGCCCGCCCGGTTCGGGCCAGAGCCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGA
GCGGCAAGCACTACGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAA
CTTAACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATAC
TGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAGCGGTTCAGCGAGGAAGAATGCCTCCAA
CCCAGCCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCCCCTCAACGGCCACTGCTACCTGTCCGG
CTACATCTCGCTGCTGCTGCGCGCCGAGCCCTACCCCACGTCGCGCTACGGCAGCCAGTGCATGCAGCCC
AACAACATTATGGGCATCGAGAACATCTGCGAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGG
CCCGCAACATCCCCTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTCACCTGGAG
CGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCTATGCCGCTGCACGTGGCGCCGTTGCTGGCCGCCGCC
GGCCTGCATGCCTCGCCCATGTCTGCCGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTCCAGG
AGCAGGTGGAGAAGCTCAAGGCGCTACACGTCGACTCAGCCGAGTACAGCTGCCTCAAAGCCATCGTGCT
GTTCACGTCAGACGCCTGTGGCCTGTCGGATGCGGCCCACATCGAGAGCCTGCAGGAGAAGTCGCAGTGC
GCACTGGAGGAGTACGTGAGGAGCCAGTACCCCAACCAGCCCAGCCGTTTTGGCAAACTGCTGCTGCGAC
TGCCCTCGCTGCGCACCGTGTCCTCCTCCGTCATCGAGCAGCTCTTCTTCGTCCGTTTGGTAGGTAAAAC
CCCCATCGAAACTCTCATCCGCGATATGTTACTGTCTGGGAGCAGCTTCAACTGGCCTTACATGTCCATC
CAGTGCTCCTAG

Translation (423 aa):
MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDK
GQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQY
CRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP
NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAA
GLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQC
ALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSI
QCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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