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Report for CCDS13672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13672.1 Public Homo sapiens 21 MX2 24 110 108 CCDS HistoryNCBI Gene:4600Re-query CCDS DB by CCDS ID:13672.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13672.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330714.8 ENSP00000333657.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330714.8Link to Ensembl Protein Viewer:ENSP00000333657.3Re-query CCDS DB by Nucleotide ID:ENST00000330714Re-query CCDS DB by Protein ID:ENSP00000333657
Original member Current member EBI ENST00000435611.6 ENSP00000389256.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435611.6Link to Ensembl Protein Viewer:ENSP00000389256.2Re-query CCDS DB by Nucleotide ID:ENST00000435611Re-query CCDS DB by Protein ID:ENSP00000389256
Original member Current member EBI ENST00000680862.1 ENSP00000506423.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680862.1Link to Ensembl Protein Viewer:ENSP00000506423.1Re-query CCDS DB by Nucleotide ID:ENST00000680862Re-query CCDS DB by Protein ID:ENSP00000506423
Original member Current member NCBI NM_002463.2 NP_002454.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002463.2Link to Protein Sequence:NP_002454.1Re-query CCDS DB by Nucleotide ID:NM_002463Re-query CCDS DB by Protein ID:NP_002454Link to BLAST:NP_002454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002454.1 715 P20592-1 715 100% 0 0

Chromosomal Locations for CCDS 13672.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 41376907 41377155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41377789 41377981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41380017 41380151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41382410 41382564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41390565 41390703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41395587 41395785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41397613 41397691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41398897 41399019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41399196 41399337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41401970 41402128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41403267 41403343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41406744 41406998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41407991 41408233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGTCTAAGGCCCACAAGCCTTGGCCCTACCGGAGGAGAAGTCAATTTTCTTCTCGAAAATACCTGAAAA
AAGAAATGAATTCCTTCCAGCAACAGCCACCGCCATTCGGCACAGTGCCACCACAAATGATGTTTCCTCC
AAACTGGCAGGGGGCAGAGAAGGACGCTGCTTTCCTCGCCAAGGACTTCAACTTTCTCACTTTGAACAAT
CAGCCACCACCAGGAAACAGGAGCCAACCAAGGGCAATGGGGCCCGAGAACAACCTGTACAGCCAGTACG
AGCAGAAGGTGCGCCCCTGCATTGACCTCATCGACTCCCTGCGGGCTCTGGGTGTGGAGCAGGACCTGGC
CCTGCCAGCCATCGCCGTCATCGGGGACCAGAGCTCGGGCAAGAGCTCTGTGCTGGAGGCACTGTCAGGA
GTCGCGCTTCCCAGAGGCAGCGGAATCGTAACCAGGTGTCCGCTGGTGCTGAAACTGAAAAAGCAGCCCT
GTGAGGCATGGGCCGGAAGGATCAGCTACCGGAACACCGAGCTAGAGCTTCAGGACCCTGGCCAGGTGGA
GAAAGAGATACACAAAGCCCAGAACGTCATGGCCGGGAATGGCCGGGGCATCAGCCATGAGCTCATCAGC
CTGGAGATCACCTCCCCTGAGGTTCCAGACCTGACCATCATTGACCTTCCCGGCATCACCAGGGTGGCTG
TGGACAACCAGCCCCGAGACATCGGACTGCAGATCAAGGCTCTCATCAAGAAGTACATCCAGAGGCAGCA
GACGATCAACTTGGTGGTGGTTCCCTGTAACGTGGACATTGCCACCACGGAGGCGCTGAGCATGGCCCAT
GAGGTGGACCCGGAAGGGGACAGGACCATCGGTATCCTGACCAAACCAGATCTAATGGACAGGGGCACTG
AGAAAAGCGTCATGAATGTGGTGCGGAACCTCACGTACCCCCTCAAGAAGGGCTACATGATTGTGAAGTG
CCGGGGCCAGCAGGAGATCACAAACAGGCTGAGCTTGGCAGAGGCAACCAAGAAAGAAATTACATTCTTT
CAAACACATCCATATTTCAGAGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGGCAGAAAGAC
TTACCACTGAACTCATCATGCATATCCAAAAATCGCTCCCGTTGTTAGAAGGACAAATAAGGGAGAGCCA
CCAGAAGGCGACCGAGGAGCTGCGGCGTTGCGGGGCTGACATCCCCAGCCAGGAGGCCGACAAGATGTTC
TTTCTAATTGAGAAAATCAAGATGTTTAATCAGGACATCGAAAAGTTAGTAGAAGGAGAAGAAGTTGTAA
GGGAGAATGAGACCCGTTTATACAACAAAATCAGAGAGGATTTTAAAAACTGGGTAGGCATACTTGCAAC
TAATACCCAAAAAGTTAAAAATATTATCCACGAAGAAGTTGAAAAATATGAAAAGCAGTATCGAGGCAAG
GAGCTTCTGGGATTTGTCAACTACAAGACATTTGAGATCATCGTGCATCAGTACATCCAGCAGCTGGTGG
AGCCCGCCCTTAGCATGCTCCAGAAAGCCATGGAAATTATCCAGCAAGCTTTCATTAACGTGGCCAAAAA
ACATTTTGGCGAATTTTTCAACCTTAACCAAACTGTTCAGAGCACGATTGAAGACATAAAAGTGAAACAC
ACAGCAAAGGCAGAAAACATGATCCAACTTCAGTTCAGAATGGAGCAGATGGTTTTTTGTCAAGATCAGA
TTTACAGTGTTGTTCTGAAGAAAGTCCGAGAAGAGATTTTTAACCCTCTGGGGACGCCTTCACAGAATAT
GAAGTTGAACTCTCATTTTCCCAGTAATGAGTCTTCGGTTTCCTCCTTTACTGAAATAGGCATCCACCTG
AATGCCTACTTCTTGGAAACCAGCAAACGTCTCGCCAACCAGATCCCATTTATAATTCAGTATTTTATGC
TCCGAGAGAATGGTGACTCCTTGCAGAAAGCCATGATGCAGATACTACAGGAAAAAAATCGCTATTCCTG
GCTGCTTCAAGAGCAGAGTGAGACCGCTACCAAGAGAAGAATCCTTAAGGAGAGAATTTACCGGCTCACT
CAGGCGCGACACGCACTCTGTCAATTCTCCAGCAAAGAGATCCACTGA

Translation (715 aa):
MSKAHKPWPYRRRSQFSSRKYLKKEMNSFQQQPPPFGTVPPQMMFPPNWQGAEKDAAFLAKDFNFLTLNN
QPPPGNRSQPRAMGPENNLYSQYEQKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSG
VALPRGSGIVTRCPLVLKLKKQPCEAWAGRISYRNTELELQDPGQVEKEIHKAQNVMAGNGRGISHELIS
LEITSPEVPDLTIIDLPGITRVAVDNQPRDIGLQIKALIKKYIQRQQTINLVVVPCNVDIATTEALSMAH
EVDPEGDRTIGILTKPDLMDRGTEKSVMNVVRNLTYPLKKGYMIVKCRGQQEITNRLSLAEATKKEITFF
QTHPYFRVLLEEGSATVPRLAERLTTELIMHIQKSLPLLEGQIRESHQKATEELRRCGADIPSQEADKMF
FLIEKIKMFNQDIEKLVEGEEVVRENETRLYNKIREDFKNWVGILATNTQKVKNIIHEEVEKYEKQYRGK
ELLGFVNYKTFEIIVHQYIQQLVEPALSMLQKAMEIIQQAFINVAKKHFGEFFNLNQTVQSTIEDIKVKH
TAKAENMIQLQFRMEQMVFCQDQIYSVVLKKVREEIFNPLGTPSQNMKLNSHFPSNESSVSSFTEIGIHL
NAYFLETSKRLANQIPFIIQYFMLRENGDSLQKAMMQILQEKNRYSWLLQEQSETATKRRILKERIYRLT
QARHALCQFSSKEIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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