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Report for CCDS13996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13996.1 Public Homo sapiens 22 ATF4 24 110 108 CCDS HistoryNCBI Gene:468Re-query CCDS DB by CCDS ID:13996.1Re-query CCDS DB by GeneID:468See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13996.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337304.2 ENSP00000336790.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337304.2Link to Ensembl Protein Viewer:ENSP00000336790.2Re-query CCDS DB by Nucleotide ID:ENST00000337304Re-query CCDS DB by Protein ID:ENSP00000336790
Original member Current member EBI ENST00000396680.3 ENSP00000379912.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396680.3Link to Ensembl Protein Viewer:ENSP00000379912.1Re-query CCDS DB by Nucleotide ID:ENST00000396680Re-query CCDS DB by Protein ID:ENSP00000379912
Original member Current member EBI ENST00000404241.6 ENSP00000384587.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404241.6Link to Ensembl Protein Viewer:ENSP00000384587.2Re-query CCDS DB by Nucleotide ID:ENST00000404241Re-query CCDS DB by Protein ID:ENSP00000384587
Original member Current member EBI ENST00000674568.2 ENSP00000501783.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674568.2Link to Ensembl Protein Viewer:ENSP00000501783.2Re-query CCDS DB by Nucleotide ID:ENST00000674568Re-query CCDS DB by Protein ID:ENSP00000501783
Original member Current member EBI ENST00000674920.3 ENSP00000501863.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674920.3Link to Ensembl Protein Viewer:ENSP00000501863.1Re-query CCDS DB by Nucleotide ID:ENST00000674920Re-query CCDS DB by Protein ID:ENSP00000501863
Original member Current member EBI ENST00000676346.2 ENSP00000502400.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676346.2Link to Ensembl Protein Viewer:ENSP00000502400.2Re-query CCDS DB by Nucleotide ID:ENST00000676346Re-query CCDS DB by Protein ID:ENSP00000502400
Original member Current member EBI ENST00000674835.2 ENSP00000502610.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674835.2Link to Ensembl Protein Viewer:ENSP00000502610.2Re-query CCDS DB by Nucleotide ID:ENST00000674835Re-query CCDS DB by Protein ID:ENSP00000502610
Original member Current member EBI ENST00000679776.1 ENSP00000505360.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679776.1Link to Ensembl Protein Viewer:ENSP00000505360.1Re-query CCDS DB by Nucleotide ID:ENST00000679776Re-query CCDS DB by Protein ID:ENSP00000505360
Original member Current member NCBI NM_001675.4 NP_001666.2 Accepted alive Link to Nucleotide Sequence:NM_001675.4Link to Protein Sequence:NP_001666.2Re-query CCDS DB by Nucleotide ID:NM_001675Re-query CCDS DB by Protein ID:NP_001666Link to BLAST:NP_001666.2
Original member Current member NCBI NM_182810.3 NP_877962.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182810.3Link to Protein Sequence:NP_877962.1Re-query CCDS DB by Nucleotide ID:NM_182810Re-query CCDS DB by Protein ID:NP_877962Link to BLAST:NP_877962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001666.2 351 P18848 351 100% 0 0
NP_877962.1 351 P18848 351 100% 0 0

Chromosomal Locations for CCDS 13996.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 39521446 39521671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39521773 39522602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGACCGAAATGAGCTTCCTGAGCAGCGAGGTGTTGGTGGGGGACTTGATGTCCCCCTTCGACCAGTCGG
GTTTGGGGGCTGAAGAAAGCCTAGGTCTCTTAGATGATTACCTGGAGGTGGCCAAGCACTTCAAACCTCA
TGGGTTCTCCAGCGACAAGGCTAAGGCGGGCTCCTCCGAATGGCTGGCTGTGGATGGGTTGGTCAGTCCC
TCCAACAACAGCAAGGAGGATGCCTTCTCCGGGACAGATTGGATGTTGGAGAAAATGGATTTGAAGGAGT
TCGACTTGGATGCCCTGTTGGGTATAGATGACCTGGAAACCATGCCAGATGACCTTCTGACCACGTTGGA
TGACACTTGTGATCTCTTTGCCCCCCTAGTCCAGGAGACTAATAAGCAGCCCCCCCAGACGGTGAACCCA
ATTGGCCATCTCCCAGAAAGTTTAACAAAACCCGACCAGGTTGCCCCCTTCACCTTCTTACAACCTCTTC
CCCTTTCCCCAGGGGTCCTGTCCTCCACTCCAGATCATTCCTTTAGTTTAGAGCTGGGCAGTGAAGTGGA
TATCACTGAAGGAGATAGGAAGCCAGACTACACTGCTTACGTTGCCATGATCCCTCAGTGCATAAAGGAG
GAAGACACCCCTTCAGATAATGATAGTGGCATCTGTATGAGCCCAGAGTCCTATCTGGGGTCTCCTCAGC
ACAGCCCCTCTACCAGGGGCTCTCCAAATAGGAGCCTCCCATCTCCAGGTGTTCTCTGTGGGTCTGCCCG
TCCCAAACCTTACGATCCTCCTGGAGAGAAGATGGTAGCAGCAAAAGTAAAGGGTGAGAAACTGGATAAG
AAGCTGAAAAAAATGGAGCAAAACAAGACAGCAGCCACTAGGTACCGCCAGAAGAAGAGGGCGGAGCAGG
AGGCTCTTACTGGTGAGTGCAAAGAGCTGGAAAAGAAGAACGAGGCTCTAAAAGAGAGGGCGGATTCCCT
GGCCAAGGAGATCCAGTACCTGAAAGATTTGATAGAAGAGGTCCGCAAGGCAAGGGGGAAGAAAAGGGTC
CCCTAG

Translation (351 aa):
MTEMSFLSSEVLVGDLMSPFDQSGLGAEESLGLLDDYLEVAKHFKPHGFSSDKAKAGSSEWLAVDGLVSP
SNNSKEDAFSGTDWMLEKMDLKEFDLDALLGIDDLETMPDDLLTTLDDTCDLFAPLVQETNKQPPQTVNP
IGHLPESLTKPDQVAPFTFLQPLPLSPGVLSSTPDHSFSLELGSEVDITEGDRKPDYTAYVAMIPQCIKE
EDTPSDNDSGICMSPESYLGSPQHSPSTRGSPNRSLPSPGVLCGSARPKPYDPPGEKMVAAKVKGEKLDK
KLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEVRKARGKKRV
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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