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Report for CCDS27903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27903.1 Public Mus musculus 15 Itga5 23 108 98 CCDS HistoryNCBI Gene:16402Re-query CCDS DB by CCDS ID:27903.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27903.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023128.7 ENSMUSP00000023128.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023128.7Link to Ensembl Protein Viewer:ENSMUSP00000023128.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023128Re-query CCDS DB by Protein ID:ENSMUSP00000023128
Original member Current member NCBI NM_010577.4 NP_034707.5 Accepted alive Link to Nucleotide Sequence:NM_010577.4Link to Protein Sequence:NP_034707.5Re-query CCDS DB by Nucleotide ID:NM_010577Re-query CCDS DB by Protein ID:NP_034707Link to BLAST:NP_034707.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034707.5 1053 P11688 1053 100% 0 0

Chromosomal Locations for CCDS 27903.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103345269 103345352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103345952 103346074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103346581 103346682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103347671 103347784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103347892 103347975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103349612 103349764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103350165 103350270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103350374 103350454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103350574 103350653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103350764 103350856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103350946 103351096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103351378 103351445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103351541 103351678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103352015 103352169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103352258 103352313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103352484 103352585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103352916 103352961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103353143 103353334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103353574 103353782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103354047 103354099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103354268 103354324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103355926 103355969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103356077 103356121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103356316 103356441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103356779 103356824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103356920 103356981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103357192 103357312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103357448 103357560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103359050 103359180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103366300 103366526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3162 nt):
ATGGGGAGCTGGACGCCACGGTCGCCTCGATCTCCTCTCCACGCGGTGCTGCTGCGCTGGGGGCCCCGAC
GCCTACCGCCGCTGCTGCCTCTGCTGCTGCTACTGTGGCCGCCACCACTCCAGGTTGGGGGCTTCAACCT
AGACGCGGAGGCCCCGGCGGTGCTCTCCGGGCCCCCCGGCTCCCTTTTTGGCTTCTCCGTGGAGTTTTAC
CGGCCGGGAAGGGACGGAGTCAGTGTGCTGGTTGGGGCACCCAAGGCTAACACTAGCCAGCCAGGTGTAC
TGCAAGGTGGTGCTGTCTATGTGTGTCCCTGGGGCACCAGTCCTATCCAGTGCACCACCATTCAATTTGA
CAGCAAAGGCTCCCGGATTCTGGAGTCCTCACTGTACAGTGCCAAGGGAGAGGAGCCTGTGGAGTACAAG
TCCTTGCAGTGGTTCGGAGCAACAGTTCGGGCCCATGGCTCCTCCATCTTGGCATGTGCTCCACTGTATA
GCTGGCGCACAGAAAAGGACCCACAGAATGACCCAGTGGGCACCTGCTACCTCTCCACAGAAAACTTCAC
CCGGATTCTGGAGTACGCACCTTGCCGCTCAGATTTTGGCAGTGCAGCAGGGCAGGGCTACTGCCAAGGG
GGCTTCAGTGCTGAGTTCACCAAGACTGGCCGTGTGGTCCTGGGTGGACCTGGAAGCTACTTCTGGCAAG
GCCAGATCCTGTCCGCCACTCAAGAGCAGATCTCGGAGTCCTATTACCCAGAGTATCTCATCAACCCTGT
TCAGGGGCAGCTGCAGACCCGCCAGGCCAGCTCCGTCTATGATGACAGCTACTTGGGATACTCTGTGGCT
GTGGGTGAATTCAGTGGTGATGACACAGAAGACTTTGTTGCTGGCGTGCCCAAGGGGAACCTCACCTATG
GCTATGTCACCGTCCTTAATGGCTCAGACATCCACTCCCTCTACAACGTCTCAGGAGAACAGATGGCCTC
CTACTTCGGCTATGCTGTGGCTGCCACTGATACCAATGGAGATGGGCTAGATGACCTACTGGTAGGGGCA
CCCCTGCTCATGGAGCGGACAGCTGATGGGAGACCTCAGGAGGTGGGCAGGGTCTACATCTATCTGCAGC
GCCCAGCGGGCATAGATCCCACACCCACCCTCACCCTCACTGGGCAAGATGAGTTCAGCCGATTCGGCAG
CTCCTTGACACCCTTGGGGGACCTGGACCAAGACGGCTACAATGATGTCGCCATTGGGGCTCCATTTGGT
GGGGAGGCCCAGCAGGGAGTCGTATTTATATTCCCGGGAGGCCCAGGAGGACTGAGCACTAAACCTTCCC
AGGTTTTGCAGCCTCTTTGGGCAGCTGGCCGTACCCCAGACTTCTTTGGCTCTGCCCTTCGAGGAGGACG
AGATCTGGATGGCAATGGATACCCTGATCTAATCGTTGGATCCTTTGGTGTGGACAAGGCTCTGGTGTAC
AGAGGGCGGCCCATCATATCTGCCAGCGCATCTCTCACCATCTTCCCCTCCATGTTCAACCCAGAGGAGC
GCAGTTGCAGCCTGGAAGGGAACCCTGTGTCCTGCATCAACCTTAGCTTCTGCCTCAATGCCTCTGGAAA
ACATGTCCCCAACTCTATAGGCTTCGAGGTGGAACTCCAACTGGACTGGCAGAAGCAAAAGGGAGGGGTC
CGGCGGGCACTGTTCCTGACTTCCAAGCAGGCCACCCTTACCCAGACCCTGCTTATCCAGAATGGGGCTC
GGGAGGACTGCAGGGAGATGAAGATCTACCTCAGGAATGAATCAGAATTCAGAGACAAACTCTCCCCAAT
TCACATTGCCCTCAACTTCTCCTTGGACCCCAAAGCTCCCATGGACAGCCATGGCCTCCGGCCAGTTCTA
CACTACCAAAGCAAAAGCAGGATAGAGGACAAGGCCCAGATCTTGCTGGACTGTGGTGAAGACAATATCT
GTGTGCCTGACCTGCAGCTGGATGTGTATGGGGAGAAGAAACATGTGTACCTGGGTGACAAGAACGCACT
GAACCTGACATTCCATGCCCAAAATCTGGGTGAGGGCGGTGCCTATGAAGCCGAGCTTCGGGTCACAGCC
CCTCTAGAGGCCGAGTACTCAGGACTTGTCAGACACCCAGGGAACTTCTCCAGCCTGAGCTGTGACTACT
TTGCTGTGAACCAGAGCCGCCAGCTGGTGTGTGACCTGGGCAACCCCATGAAGGCAGGCACCAGTCTCTG
GGGTGGCCTTCGGTTCACTGTTCCTCATCTTCAAGACACAAAGAAAACCATCCAGTTTGACTTTCAGATC
CTCAGCAAGAACCTGAACAACTCACAAAGCAACGTGGTCTCCTTCCCACTCTCGGTGGAGGCTCAAGCCC
AGGTCTCCCTTAATGGTGTCTCCAAGCCTGAAGCTGTGATTTTCCCAGTCAGCGACTGGAATCCTCAAGA
CCAGCCTCAGAAGGAGGAAGACTTGGGCCCAGCTGTCCACCATGTCTACGAGCTCATCAACCAGGGGCCC
AGCTCCATCAGCCAGGGTGTGCTGGAGCTCAGCTGTCCACAGGCTCTGGAAGGCCAACAGCTCCTCTATG
TGACCAAGGTGACAGGACTCAGCAACTGCACCTCCAACTACACCCCCAACTCACAGGGCCTGGAGTTGGA
TCCAGAGACCTCTCCACACCACCTGCAGAAACGAGAGGCTCCAGGGAGGAGTTCTACTGCCTCAGGAACA
CAAGTTCTGAAATGCCCTGAAGCCAAGTGTTTCAGGCTGCGCTGTGAGTTTGGGCCACTGCACCGCCAAG
AGAGCCGTAGTCTGCAGCTGCATTTCCGAGTCTGGGCCAAGACCTTCTTGCAGCGGGAATACCAGCCATT
TAGCCTTCAGTGTGAGGCTGTATATGAAGCTCTGAAGATGCCCTACCAGATCCTGCCTCGGCAGCTTCCC
CAAAAGAAACTTCAGGTGGCCACAGCCGTGCAGTGGACCAAGGCAGAAGGCAGCAATGGTGTCCCGTTGT
GGATCATCATCCTAGCCATTCTTTTTGGCCTCCTGCTCCTAGGTCTGCTCATCTACGTCCTCTACAAGCT
CGGCTTCTTCAAACGTTCCCTCCCCTACGGCACAGCCATGGAAAAAGCTCAGCTCAAGCCTCCAGCCACC
TCAGATGCCTGA

Translation (1053 aa):
MGSWTPRSPRSPLHAVLLRWGPRRLPPLLPLLLLLWPPPLQVGGFNLDAEAPAVLSGPPGSLFGFSVEFY
RPGRDGVSVLVGAPKANTSQPGVLQGGAVYVCPWGTSPIQCTTIQFDSKGSRILESSLYSAKGEEPVEYK
SLQWFGATVRAHGSSILACAPLYSWRTEKDPQNDPVGTCYLSTENFTRILEYAPCRSDFGSAAGQGYCQG
GFSAEFTKTGRVVLGGPGSYFWQGQILSATQEQISESYYPEYLINPVQGQLQTRQASSVYDDSYLGYSVA
VGEFSGDDTEDFVAGVPKGNLTYGYVTVLNGSDIHSLYNVSGEQMASYFGYAVAATDTNGDGLDDLLVGA
PLLMERTADGRPQEVGRVYIYLQRPAGIDPTPTLTLTGQDEFSRFGSSLTPLGDLDQDGYNDVAIGAPFG
GEAQQGVVFIFPGGPGGLSTKPSQVLQPLWAAGRTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKALVY
RGRPIISASASLTIFPSMFNPEERSCSLEGNPVSCINLSFCLNASGKHVPNSIGFEVELQLDWQKQKGGV
RRALFLTSKQATLTQTLLIQNGAREDCREMKIYLRNESEFRDKLSPIHIALNFSLDPKAPMDSHGLRPVL
HYQSKSRIEDKAQILLDCGEDNICVPDLQLDVYGEKKHVYLGDKNALNLTFHAQNLGEGGAYEAELRVTA
PLEAEYSGLVRHPGNFSSLSCDYFAVNQSRQLVCDLGNPMKAGTSLWGGLRFTVPHLQDTKKTIQFDFQI
LSKNLNNSQSNVVSFPLSVEAQAQVSLNGVSKPEAVIFPVSDWNPQDQPQKEEDLGPAVHHVYELINQGP
SSISQGVLELSCPQALEGQQLLYVTKVTGLSNCTSNYTPNSQGLELDPETSPHHLQKREAPGRSSTASGT
QVLKCPEAKCFRLRCEFGPLHRQESRSLQLHFRVWAKTFLQREYQPFSLQCEAVYEALKMPYQILPRQLP
QKKLQVATAVQWTKAEGSNGVPLWIIILAILFGLLLLGLLIYVLYKLGFFKRSLPYGTAMEKAQLKPPAT
SDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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