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Report for CCDS4678.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
4678.1 |
Public |
Homo sapiens |
6 |
TRIM26 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:7726](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:4678.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 4678.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000453195.5 |
ENSP00000391879.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000453195.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000391879.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000453195](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000391879](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000437089.5 |
ENSP00000395491.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000437089.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000395491.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000437089](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000395491](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000454678.7 |
ENSP00000410446.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000454678.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000410446.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000454678](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000410446](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001242783.2 |
NP_001229712.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001242783.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001229712.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001242783](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001229712](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001229712.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_003449.5 |
NP_003440.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_003449.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_003440.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_003449](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_003440](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_003440.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 4678.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1620 nt): ATGGCCACGTCAGCCCCACTACGGAGCCTGGAAGAGGAGGTGACCTGCTCCATCTGTCTTGATTACCTGC GGGACCCTGTGACCATTGACTGTGGCCACGTCTTCTGCCGCAGCTGCACCACAGACGTCCGCCCCATCTC AGGGAGCCGCCCCGTCTGCCCACTCTGCAAGAAGCCTTTTAAGAAGGAGAACATCCGACCCGTGTGGCAA CTGGCCAGCCTGGTGGAGAACATTGAGCGGCTGAAGGTGGACAAGGGCAGGCAGCCGGGAGAGGTGACCC GGGAGCAGCAGGATGCAAAGTTGTGCGAGCGACACCGAGAGAAGCTGCACTACTACTGTGAGGACGACGG GAAGCTGCTGTGCGTGATGTGCCGGGAGTCCCGGGAGCACAGGCCCCACACGGCCGTCCTCATGGAGAAG GCCGCCCAGCCCCACAGGGAAAAAATCCTGAACCACCTGAGTACCCTAAGGAGGGACAGAGACAAAATTC AGGGCTTCCAGGCAAAGGGAGAAGCTGATATCCTGGCCGCGCTGAAGAAGCTCCAGGACCAGAGGCAGTA CATTGTGGCTGAGTTTGAGCAGGGTCATCAGTTCCTGAGGGAGCGGGAGGAACACCTGCTGGAACAGCTG GCGAAGCTGGAGCAGGAGCTCACGGAGGGCAGGGAGAAGTTCAAGAGCCGGGGCGTCGGGGAGCTTGCCC GGCTGGCCCTGGTCATCTCCGAACTGGAGGGCAAGGCGCAGCAGCCAGCTGCAGAGCTCATGCAGGACAC GAGAGACTTCCTAAACAGGTATCCACGGAAGAAGTTCTGGGTTGGGAAACCCATTGCTCGAGTGGTTAAA AAAAAGACCGGAGAATTCTCAGATAAACTCCTCTCTCTGCAACGAGGCCTGAGGGAATTCCAGGGGAAGC TGCTGAGAGACTTGGAATATAAGACAGTGAGCGTCACCCTGGACCCACAGTCGGCCAGTGGGTACCTGCA GCTGTCAGAGGACTGGAAGTGCGTGACCTACACCAGCCTGTACAAGAGTGCCTACCTGCACCCCCAGCAG TTTGACTGTGAGCCTGGGGTGCTAGGCAGCAAGGGCTTCACCTGGGGCAAGGTCTACTGGGAAGTGGAAG TGGAGAGGGAGGGCTGGTCTGAGGATGAAGAAGAGGGGGATGAGGAGGAAGAGGGAGAAGAGGAGGAGGA GGAAGAGGAGGCCGGCTATGGGGATGGATATGACGACTGGGAAACGGACGAAGATGAGGAATCGTTGGGC GATGAAGAGGAAGAAGAGGAGGAGGAAGAGGAGGAAGTTCTGGAAAGCTGCATGGTGGGGGTGGCTAGAG ACTCTGTGAAGAGGAAGGGAGACCTCTCCCTGCGGCCAGAGGATGGCGTGTGGGCGCTGCGCCTCTCCTC CTCCGGCATCTGGGCCAACACCAGCCCCGAGGCTGAGCTTTTCCCAGCACTGCGGCCCCGGAGAGTGGGC ATCGCCCTGGATTATGAAGGGGGCACCGTGACTTTCACCAACGCAGAGTCACAGGAACTCATCTACACCT TCACTGCCACCTTCACCCGGCGCCTGGTCCCCTTCCTGTGGCTCAAGTGGCCAGGAACACGCCTCCTGCT AAGACCCTGA
Translation (539 aa): MATSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVWQ LASLVENIERLKVDKGRQPGEVTREQQDAKLCERHREKLHYYCEDDGKLLCVMCRESREHRPHTAVLMEK AAQPHREKILNHLSTLRRDRDKIQGFQAKGEADILAALKKLQDQRQYIVAEFEQGHQFLREREEHLLEQL AKLEQELTEGREKFKSRGVGELARLALVISELEGKAQQPAAELMQDTRDFLNRYPRKKFWVGKPIARVVK KKTGEFSDKLLSLQRGLREFQGKLLRDLEYKTVSVTLDPQSASGYLQLSEDWKCVTYTSLYKSAYLHPQQ FDCEPGVLGSKGFTWGKVYWEVEVEREGWSEDEEEGDEEEEGEEEEEEEEAGYGDGYDDWETDEDEESLG DEEEEEEEEEEEVLESCMVGVARDSVKRKGDLSLRPEDGVWALRLSSSGIWANTSPEAELFPALRPRRVG IALDYEGGTVTFTNAESQELIYTFTATFTRRLVPFLWLKWPGTRLLLRP
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