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229220 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
GSE150170	Epigenomic Diversity of Cortical Projection Neurons in the Mouse Brain	Methylation profiling by high throughput sequencing	Mus musculus	16971	TSV SRA Run Selector	Joseph R Ecker	Nov 16, 2020
GSE158435	Single-cell joint detection of chromatin occupancy and transcriptome enables higher-dimensional epigenomic reconstructions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16491	BED BW TXT SRA Run Selector	Haiqing Xiong	Mar 05, 2021
GSE211692	Prediction of tissue-of-origin of early-stage cancers using serum miRNomes	Non-coding RNA profiling by array	Homo sapiens	16190	TXT	Satoko Takizawa	Nov 12, 2022
GSE127893	The major risk factors for Alzheimer’s disease: Age, Sex and Genes, modulate the microglia response to Aβ plaques	Expression profiling by high throughput sequencing	Mus musculus	15360		Bart de Strooper	Apr 23, 2019
GSE223748	Mammalian Methylation Consortium	Methylation profiling by array	Acinonyx jubatus Acomys cahirinus Addax nasomaculatus Aepyceros melampus Alexandromys mongolicus Alexandromys oeconomus Alticola barakshin Alticola semicanus Amblysomus hottentotus Antidorcas marsupialis Antrozous pallidus Aonyx cinereus Aplodontia rufa Apodemus agrarius Apodemus peninsulae Apodemus sylvaticus Apodemus uralensis Artibeus jamaicensis Arvicanthis niloticus Asellia tridens Atelerix albiventris Balaena mysticetus Balaenoptera borealis Balaenoptera musculus Bathyergus janetta Bathyergus suillus Blarina brevicauda Bos taurus Bradypus variegatus Cabassous unicinctus Caenolestes fuliginosus Callithrix geoffroyi Callithrix jacchus Callospermophilus lateralis Callospermophilus saturatus Canis latrans Canis lupus familiaris Capra hircus Capreolus capreolus Carollia perspicillata Castor canadensis Cavia aperea Cavia porcellus Cavia tschudii Cephalorhynchus commersonii Cephalorhynchus hectori hectori Cephalorhynchus hectori maui Ceratotherium simum simum Cervus canadensis Cervus elaphus Chaetophractus villosus Cheirogaleus medius Chinchilla lanigera Chlorocebus sabaeus Choloepus didactylus Choloepus hoffmanni Chrysocyon brachyurus Clethrionomys gapperi Condylura cristata Connochaetes taurinus albojubatus Cricetomys gambianus Cricetulus barabensis Cricetulus griseus Cricetulus longicaudatus Crocidura cyanea Crocuta crocuta Cryptomys hottentotus Ctenomys lewisi Ctenomys opimus Ctenomys steinbachi Cuniculus paca Cyclopes didactylus Cynopterus brachyotis Dasypus novemcinctus Daubentonia madagascariensis Delphinapterus leucas Delphinus delphis Dendrohyrax arboreus Desmodus rotundus Diceros bicornis Didelphis marsupialis Didelphis virginiana Dipus sagitta Dromiciops gliroides Echinops telfairi Eidolon helvum Elephantulus edwardii Elephantulus myurus Elephas maximus Ellobius talpinus Enhydra lutris Eozapus setchuanus Eptesicus fuscus Equus asinus somalicus Equus caballus Equus grevyi Equus quagga Erethizon dorsatum Erinaceus europaeus Eudorcas thomsonii Eulemur albifrons Eulemur coronatus Eulemur flavifrons Eulemur fulvus Eulemur fulvus collaris Eulemur macaco Eulemur mongoz Eulemur rubriventer Eulemur rufus Eulemur sanfordi Eumetopias jubatus Felis catus Fukomys damarensis Galago moholi Galea musteloides Galea musteloides leucoblephara Galeopterus variegatus Gazella leptoceros Georychus capensis Gerbillus cheesmani Gerbillus nanus Giraffa camelopardalis Glaucomys sabrinus Globicephala macrorhynchus Gorilla gorilla Hapalemur griseus Hemicentetes semispinosus Hemiechinus auritus Heterocephalus glaber Hipposideros ruber Hippotragus equinus Hippotragus niger Homo sapiens Hydrochoerus hydrochaeris Hylomys suillus Hystrix cristata Ictidomys tridecemlineatus Jaculus jaculus Kobus megaceros Lagenorhynchus albirostris Lagenorhynchus obliquidens Lasiopodomys brandtii Lasiopodomys gregalis Lasiopodomys mandarinus Lemur catta Leptonycteris yerbabuenae Lepus americanus Lepus californicus Litocranius walleri Loris tardigradus Loxodonta africana Lycaon pictus Lynx rufus Macaca mulatta Macropus fuliginosus Macropus giganteus Macroscelides proboscideus Marmota flaviventris Marmota monax Martes americana Megaptera novaeangliae Meriones libycus Meriones rex Meriones unguiculatus Mesocricetus auratus Mesoplodon bidens Micaelamys namaquensis Microcebus murinus Microgale cowani Microgale drouhardi Microgale thomasi Microtus fortis Microtus guentheri Microtus maximowiczii Microtus ochrogaster Microtus pennsylvanicus Microtus richardsoni Mirza zaza Molossus molossus Monodelphis domestica Mops pumilus Muntiacus vaginalis Mus minutoides Mus musculus Mustela altaica Mustela frenata Mustela putorius furo Myocastor coypus Myodes rufocanus Myotis brandtii Myotis evotis Myotis lucifugus Myotis myotis Myotis nattereri Myotis thysanodes Myotis vivesi Myotis yumanensis Nanger dama Nanger granti Nanger soemmerringii Nannospalax ehrenbergi Nannospalax galili Napaeozapus insignis Neogale vison Neomys fodiens Neophoca cinerea Neotoma cinerea Nesogale talazaci Neurotrichus gibbsii Notamacropus agilis Notamacropus eugenii Notamacropus rufogriseus Nothocricetulus migratorius Nyctalus noctula Nycticebus coucang Nycticeius humeralis Ochotona alpina Ochotona dauurica Ochotona hyperborea Ochotona pallasi Ochotona princeps Ochotona rufescens Odobenus rosmarus divergens Odocoileus virginianus Okapia johnstoni Ondatra zibethicus Orcinus orca Oreamnos americanus Orientallactaga sibirica Ornithorhynchus anatinus Orycteropus afer Oryctolagus cuniculus Osphranter robustus Osphranter rufus Otolemur crassicaudatus Ovis aries Pan troglodytes Panthera leo Panthera tigris Papio hamadryas Paraechinus aethiopicus Paraechinus hypomelas Parascalops breweri Perodicticus potto Peromyscus californicus Peromyscus eremicus Peromyscus leucopus Peromyscus maniculatus Peromyscus polionotus Phascolarctos cinereus Phoca groenlandica Phoca vitulina Phocoena phocoena Phodopus campbelli Phodopus roborovskii Phyllostomus discolor Phyllostomus hastatus Physeter catodon Pipistrellus pipistrellus Plecotus auritus Pongo pygmaeus Procavia capensis Propithecus coquereli Propithecus diadema Propithecus tattersalli Pteropus giganteus Pteropus hypomelanus Pteropus poliocephalus Pteropus pumilus Pteropus rodricensis Pteropus vampyrus Puma concolor Rattus norvegicus Rattus rattus Rhabdomys pumilio Rhinoceros unicornis Rhinolophus alcyone Rhinolophus ferrumequinum Rhinopoma hardwickii Rhombomys opimus Rhynchonycteris naso Rousettus aegyptiacus Saccopteryx bilineata Sarcophilus harrisii Scalopus aquaticus Scapanus orarius Sciurus carolinensis Sciurus niger Setifer setosus Smutsia temminckii Sorex caecutiens Sorex cinereus Sorex hoyi Sorex isodon Sorex minutissimus Sorex palustris Sorex roboratus Sorex trowbridgii Sorex tundrensis Sorex vagrans Steno bredanensis Suncus murinus Suncus varilla Suricata suricatta Sus scrofa Sus scrofa domesticus Sylvilagus audubonii Sylvilagus bachmani Sylvilagus brasiliensis Sylvilagus floridanus Sylvilagus nuttallii Tachyglossus aculeatus Tadarida brasiliensis Talpa occidentalis Tamandua mexicana Tamandua tetradactyla Tamias amoenus Tamias striatus Tamias townsendii Tamiasciurus douglasii Tamiasciurus hudsonicus Tenrec ecaudatus Tolypeutes matacus Trachypithecus francoisi Tragelaphus angasii Tragelaphus eurycerus Tragelaphus imberbis Tragelaphus oryx Tragelaphus spekii Tragelaphus strepsiceros Trichechus manatus Tupaia belangeri Tupaia gracilis Tupaia longipes Tupaia tana Tursiops aduncus Tursiops truncatus Urocitellus columbianus Ursus americanus Varecia rubra Varecia variegata Vicugna pacos Vombatus ursinus Vulpes vulpes Xanthonycticebus pygmaeus Zalophus californianus Zapus princeps	15043	CSV DOCX IDAT	Steve Horvath	Aug 05, 2023
GSE117217	Remapping the SRA: Drosophila melanogaster RNA-Seq data from the Sequence Read Archive	Third-party reanalysis Expression profiling by high throughput sequencing	Drosophila melanogaster	14423	BW GTF TSV TXT	Brian Oliver	Jul 18, 2018
GSE116672	In vivo molecular signatures of severe dengue infection revealed by viscRNA-Seq	Expression profiling by high throughput sequencing	Homo sapiens	13127	TSV SRA Run Selector	Fabio Zanini	Nov 19, 2018
GSE59927	Drug Matrix Data - CodeLink Arrays	Expression profiling by array	Rattus norvegicus	12921	TXT	Scott Auerbach	Aug 18, 2014
GSE131670	Exome-wide rare loss-of-function variant enrichment study in 21,347 Han Chinese individuals identifies four new susceptibility genes for psoriasis [healthy controls]	Genome variation profiling by array SNP genotyping by SNP array	Homo sapiens	12398	TXT	Chao Yang	May 25, 2019
GSE127892	The major risk factors for Alzheimer’s disease: Age, Sex and Genes, modulate the microglia response to Aβ plaques (KW)	Expression profiling by high throughput sequencing	Mus musculus	12288	CSV TSV SRA Run Selector	Bart de Strooper	Apr 23, 2019
GSE161228	Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons	Expression profiling by high throughput sequencing	Drosophila melanogaster	11509	H5AD SRA Run Selector	Qijing Xie	Nov 11, 2020
GSE145668	Single cell transcriptome from aplastic anemia (AA) and healthy donors [3' RNA-seq]	Expression profiling by high throughput sequencing	Homo sapiens	11456	TXT SRA Run Selector	Caiying Zhu	Mar 31, 2021
GSE118725	Systematic Analysis of Transcription Factors Binding to Noncoding Variants	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens synthetic construct	11359	BW HIC NARROWPEAK TSV TXT VCF SRA Run Selector	Yunjiang Qiu	Oct 28, 2020
GSE146026	single cell RNA-seq analysis of ovarian cancer ascites	Expression profiling by high throughput sequencing	Homo sapiens	10906	TSV	Itay Tirosh	May 01, 2020
GSE237580	DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [9C, 9D, 9E & 9F]	Methylation profiling by high throughput sequencing	Mus musculus	9851	TSV	Joseph R Ecker	Jul 19, 2023
GSE98887	BACH2 inhibition reverses β-cell failure in type 2 diabetes models	Expression profiling by high throughput sequencing	Homo sapiens	9600	CSV SRA Run Selector	Hongxu Ding	Nov 11, 2021
GSE236451	DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [18A, 18B, 6E, 6F]	Methylation profiling by high throughput sequencing	Mus musculus	9393	TSV SRA Run Selector	Joseph R Ecker	Jul 06, 2023
GSE145669	Transcriptome analysis of HSPCs and T cells from aplastic anemia (AA) and healthy donors	Expression profiling by high throughput sequencing	Homo sapiens	9148		Caiying Zhu	Mar 31, 2021
GSE234950	DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain [14D, 15B, 15C, 16A]	Methylation profiling by high throughput sequencing	Mus musculus	9087	TSV SRA Run Selector	Joseph R Ecker	Jun 16, 2023
GSE228590	A single-cell time-lapse of mouse prenatal development from gastrula to birth	Expression profiling by high throughput sequencing	Mus musculus	9024	CSV MTX SRA Run Selector	Chengxiang Qiu	Apr 07, 2023