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Influenza Virus Resource presents data obtained from the NIAID Influenza Genome Sequencing Project as well as from GenBank, combined with tools for flu sequence analysis, annotation and submission to GenBank. In addition, it provides links to other resources that contain flu sequences, publications and general information about flu viruses.

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GenBank sequences from pandemic (H1N1) 2009 viruses

All submitted influenza sequences are available in GenBank as soon as they are processed. The pandemic (H1N1) 2009 virus sequences are listed on this page and are available for BLAST searching here, and are also available in the NCBI Influenza Virus Sequence Database, and can be retrieved with sequences from other influenza viruses for further analyses using tools integrated to the database. A complete list of GenBank sequences for these viruses can also be obtained through a special genome project page or directly from here.

The following pandemic (H1N1) 2009 virus sequences were submitted to NCBI and are available in GenBank in 2009. Sequences released in 2010 are listed here.

December 31, 2009, 13 submitted by Ivanovsky Virology Institute, Russia; 1 by Influenza National Center, Israel; 3 by Center for Disease Control and Prevention of Changsha, China:

PB2 PB1 PA HA NP NA MP NS
Influenza A virus
(A/Bryansk/IIV2971/2009(H1N1))
GU371264 GU371265 GU371263 GU371266 GU371267 GU371268
Influenza A virus
(A/Hunan Changsha/SWL4346/2009(H1N1))
GU371271
Influenza A virus
(A/Hunan Furong/SWL4224/2009(H1N1))
GU371272
Influenza A virus
(A/Hunan Kaifu/SWL4142/2009(H1N1))
GU371270
Influenza A virus
(A/Israel/6290/2009(H1N1))
GU371269*
Influenza A virus
(A/Orenburg/IIV2974/2009(H1N1))
GU371258 GU371259 GU371256 GU371260 GU371257 GU371261 GU371262
* This sequence has the H274Y mutation that confers resistance to Oseltamivir.

December 30, 2009, 24 submitted by State Research Center of Virology and Biotechnology 'Vector', Russia; 84 by R Gutierrez Children's Hospital, Argentina:

PB2 PB1 PA HA NP NA MP NS
Influenza A virus
(A/Abakan/02/2009(H1N1))
GU367315 GU367316
Influenza A virus
(A/Almati/01/2009(H1N1))
GU367337 GU367338 GU367335 GU367336
Influenza A virus
(A/Novgorod/01/2009(H1N1))
GU367325 GU367326
Influenza A virus
(A/Salekhard/01/2009(H1N1))
GU367334 GU367333 GU367332 GU367327 GU367330 GU367329 GU367328 GU367331
Influenza A virus
(A/Tomsk/07/2009(H1N1))
GU367324 GU367323 GU367322 GU367317 GU367320 GU367319 GU367318 GU367321
Influenza A virus
(A/Argentina/HNRG13/2009(H1N1))
CY053893 CY053894 CY053895 CY053896 CY053897 CY053898 CY053899 CY053900
Influenza A virus
(A/Argentina/HNRG14/2009(H1N1))
CY053901 CY053902 CY053903
Influenza A virus
(A/Argentina/HNRG15/2009(H1N1))
CY053904 CY053905 CY053906
Influenza A virus
(A/Argentina/HNRG16/2009(H1N1))
CY053907 CY053908 CY053909
Influenza A virus
(A/Argentina/HNRG17/2009(H1N1))
CY053910 CY053911 CY053912
Influenza A virus
(A/Argentina/HNRG18/2009(H1N1))
CY053913 CY053914 CY053915
Influenza A virus
(A/Argentina/HNRG20/2009(H1N1))
CY053916 CY053917 CY053918
Influenza A virus
(A/Argentina/HNRG21/2009(H1N1))
CY053919 CY053920 CY053921
Influenza A virus
(A/Argentina/HNRG23/2009(H1N1))
CY053922 CY053923* CY053924
Influenza A virus
(A/Argentina/HNRG3/2009(H1N1))
CY053925 CY053926 CY053927 CY053928 CY053929 CY053930 CY053931 CY053932
Influenza A virus
(A/Argentina/HNRG30/2009(H1N1))
CY053933 CY053934 CY053935
Influenza A virus
(A/Argentina/HNRG31/2009(H1N1))
CY053936 CY053937 CY053938
Influenza A virus
(A/Argentina/HNRG32/2009(H1N1))
CY053939 CY053940 CY053941
Influenza A virus
(A/Argentina/HNRG33/2009(H1N1))
CY053942 CY053943 CY053944
Influenza A virus
(A/Argentina/HNRG36/2009(H1N1))
CY053945 CY053946
Influenza A virus
(A/Argentina/HNRG37/2009(H1N1))
CY053947 CY053948 CY053949
Influenza A virus
(A/Argentina/HNRG39/2009(H1N1))
CY053950 CY053951 CY053952
Influenza A virus
(A/Argentina/HNRG40/2009(H1N1))
CY053953 CY053954 CY053955
Influenza A virus
(A/Argentina/HNRG41/2009(H1N1))
CY053956 CY053957 CY053958
Influenza A virus
(A/Argentina/HNRG42/2009(H1N1))
CY053959 CY053960 CY053961
Influenza A virus
(A/Argentina/HNRG44/2009(H1N1))
CY053962 CY053963 CY053964
Influenza A virus
(A/Argentina/HNRG45/2009(H1N1))
CY053965 CY053966 CY053967
Influenza A virus
(A/Argentina/HNRG48/2009(H1N1))
CY053968 CY053969 CY053970
Influenza A virus
(A/Argentina/HNRG5/2009(H1N1))
CY053971 CY053972 CY053973
Influenza A virus
(A/Argentina/HNRG8/2009(H1N1))
CY053974 CY053975 CY053976
* This sequence has the H274Y mutation that confers resistance to Oseltamivir.

December 29, 2009, 7 submitted by Norwegian Inst. of Public Health:

PB2 PB1 PA HA NP NA MP NS
Influenza A virus
(A/Norway/2924/2009(H1N1))
CY053782 CY053783 CY053784 CY053785 CY053786 CY053787 CY053788

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