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Source database (GenBank or RefSeq) File type

PNRI_Mtr1.1.1.hap1

Organism name:

Mytilus trossulus (common blue mussel)

Isolate:

FHL-02

BioSample:

SAMN39154337

BioProject:

PRJNA1057985

Submitter:

Pacific Northwest Research Institute

Date:

2024/02/13

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_036588685.1 (latest)

RefSeq assembly accession:

GCF_036588685.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAZBVT01

Assembly method:

HiFiasm v. 2022-11-24; HiC v. 2023-07-11

Expected final version:

yes

Genome coverage:

45.0x

Sequencing technology:

PacBio HiFi; Illumina HiC

IDs: 21358221 [UID] 53764428 [GenBank] 54289288 [RefSeq]

See Genome Information for Mytilus trossulus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_036588685.1	≠	GCF_036588685.1	PNRI_Mtr1.1.1.hap1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,298,590,643
Total ungapped length	1,298,484,368
Gaps between scaffolds	0
Number of scaffolds	541
Scaffold N50	85,406,108
Scaffold L50	7
Number of contigs	1,372
Contig N50	4,973,962
Contig L50	85
Total number of chromosomes and plasmids	15
Number of component sequences (WGS or clone)	541

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM071702.1	=	NC_086373.1	0
Chromosome 2	CM071703.1	=	NC_086374.1	0
Chromosome 3	CM071704.1	=	NC_086375.1	0
Chromosome 4	CM071705.1	=	NC_086376.1	0
Chromosome 5	CM071706.1	=	NC_086377.1	0
Chromosome 6	CM071707.1	=	NC_086378.1	0
Chromosome 7	CM071708.1	=	NC_086379.1	0
Chromosome 8	CM071709.1	=	NC_086380.1	0
Chromosome 9	CM071710.1	=	NC_086381.1	0
Chromosome 10	CM071711.1	=	NC_086382.1	0
Chromosome 11	CM071712.1	=	NC_086383.1	0
Chromosome 12	CM071713.1	=	NC_086384.1	0
Chromosome 13	CM071714.1	=	NC_086385.1	0
Chromosome 14	CM071715.1	=	NC_086386.1	0
unplaced	n/a	n/a	n/a	526

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,298,571,991	540	1,298,465,716	85,406,108	831
Chromosome 1	113,486,924	1	113,477,724	113,486,924	92
Chromosome 2	103,707,636	1	103,703,736	103,707,636	39
Chromosome 3	94,312,406	1	94,306,606	94,312,406	58
Chromosome 4	96,324,366	1	96,317,338	96,324,366	46
Chromosome 5	88,129,055	1	88,123,355	88,129,055	57
Chromosome 6	91,445,414	1	91,436,614	91,445,414	88
Chromosome 7	85,406,108	1	85,403,108	85,406,108	30
Chromosome 8	80,675,551	1	80,668,951	80,675,551	66
Chromosome 9	82,295,107	1	82,288,607	82,295,107	65
Chromosome 10	78,455,819	1	78,449,877	78,455,819	60
Chromosome 11	71,253,669	1	71,247,269	71,253,669	64
Chromosome 12	60,198,110	1	60,192,010	60,198,110	61
Chromosome 13	63,222,996	1	63,197,891	63,222,996	43
Chromosome 14	81,773,519	1	81,767,319	81,773,519	62
unplaced	107,885,311	526	107,885,311	3,670,610	0

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PNRI_Mtr1.1.1.hap1

See Genome Information for Mytilus trossulus

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear