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GRCr8

Organism name:
Rattus norvegicus (Norway rat)
Infraspecific name:
Strain: BN/NHsdMcwi
Sex:
male
BioSample:
SAMN38730095
BioProject:
PRJNA1027884
Submitter:
Genome Reference Consortium
Date:
2024/01/31
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_036323735.1 (latest)
RefSeq assembly accession:
GCF_036323735.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAXUCZ01
Assembly method:
HiCanu v. 2022-09-10
Expected final version:
yes
Genome coverage:
40.0x
Sequencing technology:
PacBio Sequel

IDs: 21208941 [UID] 53372518 [GenBank] 53525908 [RefSeq]

See Genome Information for Rattus norvegicus

Pathogen Detection Resources

There are 14 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,849,581,192
Total ungapped length2,845,450,615
Gaps between scaffolds0
Number of scaffolds76
Scaffold N50137,014,596
Scaffold L508
Number of contigs296
Contig N5064,250,101
Contig L5015
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)76

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_036323745.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM070391.1=NC_086019.10
Chromosome 2CM070392.1=NC_086020.10
Chromosome 3CM070393.1=NC_086021.15
Chromosome 4CM070394.1=NC_086022.10
Chromosome 5CM070395.1=NC_086023.10
Chromosome 6CM070396.1=NC_086024.10
Chromosome 7CM070397.1=NC_086025.10
Chromosome 8CM070398.1=NC_086026.10
Chromosome 9CM070399.1=NC_086027.10
Chromosome 10CM070400.1=NC_086028.10
Chromosome 11CM070401.1=NC_086029.10
Chromosome 12CM070402.1=NC_086030.10
Chromosome 13CM070403.1=NC_086031.10
Chromosome 14CM070404.1=NC_086032.10
Chromosome 15CM070405.1=NC_086033.10
Chromosome 16CM070406.1=NC_086034.10
Chromosome 17CM070407.1=NC_086035.10
Chromosome 18CM070408.1=NC_086036.10
Chromosome 19CM070409.1=NC_086037.10
Chromosome 20CM070410.1=NC_086038.10
Chromosome XCM070411.1=NC_086039.10
Chromosome YCM070412.1=NC_086040.146
unplacedn/an/an/a3

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,849,581,192762,845,450,615137,014,5962200
Chromosome 1Assembled molecule270,518,1801270,167,028270,518,180210
Chromosome 2Assembled molecule251,712,7081251,671,381251,712,70860
Chromosome 3AllAssembled moleculeUnlocalized scaffolds193,850,820189,428,3104,422,510615193,790,736189,368,2264,422,510189,428,310189,428,3102,449,92817170000
Chromosome 4Assembled molecule184,426,4811184,252,369184,426,481130
Chromosome 5Assembled molecule172,190,3051172,120,554172,190,30510
Chromosome 6Assembled molecule147,156,6531147,155,907147,156,65340
Chromosome 7Assembled molecule137,014,5961136,990,387137,014,59670
Chromosome 8Assembled molecule132,782,4361132,742,312132,782,43680
Chromosome 9Assembled molecule121,768,1501121,767,304121,768,15050
Chromosome 10Assembled molecule107,713,8081107,713,808107,713,80800
Chromosome 11Assembled molecule99,753,367199,751,64499,753,36770
Chromosome 12Assembled molecule52,308,831152,308,30852,308,83140
Chromosome 13Assembled molecule109,350,2861109,344,646109,350,28620
Chromosome 14Assembled molecule109,089,8561109,063,146109,089,85620
Chromosome 15Assembled molecule108,192,1691107,526,243108,192,169110
Chromosome 16Assembled molecule91,442,908191,428,24191,442,90840
Chromosome 17Assembled molecule93,515,804193,515,70493,515,80410
Chromosome 18Assembled molecule86,134,022186,132,09086,134,02220
Chromosome 19Assembled molecule74,246,245173,926,05474,246,24590
Chromosome 20Assembled molecule56,021,148156,018,44856,021,14810
Chromosome XAssembled molecule157,758,1231157,468,448157,758,123100
Chromosome YAllAssembled moleculeUnlocalized scaffolds92,364,54659,846,08432,518,4624714690,326,10759,836,95330,489,15459,846,08459,846,084903,984852956000
unplacedAssembled molecule269,7503269,75098,18500