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mCavPor4.1

Organism name:
Cavia porcellus (domestic guinea pig)
Infraspecific name:
Breed: Dunkin Hartley
Infraspecific name:
Strain: 051
Isolate:
PalLab524CR
Sex:
male
BioSample:
SAMN37383695
BioProject:
PRJNA1016386
Submitter:
University of Maryland
Date:
2023/12/07
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_034190915.1 (latest)
RefSeq assembly accession:
GCF_034190915.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAVRDI01
Assembly method:
Hifiasm v. 0.19.3; YaHS v. 1.1
Expected final version:
no
Genome coverage:
33.0x
Sequencing technology:
PacBio Revio

IDs: 20009211 [UID] 50735228 [GenBank] 53674748 [RefSeq]

See Genome Information for Cavia porcellus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,145,520,116
Total ungapped length3,145,503,316
Gaps between scaffolds0
Number of scaffolds588
Scaffold N5075,707,104
Scaffold L5015
Number of contigs672
Contig N5048,931,253
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)588

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,145,520,1165883,145,503,31675,707,104840