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serCan2020

Organism name:
Serinus canaria (Common canary)
Isolate:
serCan28SL12
Sex:
female
BioSample:
SAMN25990113
BioProject:
PRJNA807488
Submitter:
Max Planck Institute for Biological Intelligence, in foundation, Seewiesen
Date:
2022/08/25
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_022539315.2 (latest)
RefSeq assembly accession:
GCF_022539315.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAKSEN01
Assembly method:
CSA v. 2.6; 3dDNA v. 180419; flye polish v. 2.7.1-b1590
Expected final version:
yes
Genome coverage:
28x SMRT; 54x Illumina
Sequencing technology:
pacbio sequel; Illumina

IDs: 13534601 [UID] 35309148 [GenBank] 35864388 [RefSeq]

See Genome Information for Serinus canaria

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,050,352,878
Total ungapped length1,049,825,878
Gaps between scaffolds0
Number of scaffolds685
Scaffold N5072,083,177
Scaffold L505
Number of contigs1,739
Contig N5012,206,373
Contig L5027
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)685

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_022539385.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM045640.1=NC_066313.10
Chromosome 1ACM045641.1=NC_066314.10
Chromosome 2CM045642.1=NC_066315.10
Chromosome 3CM045643.1=NC_066316.10
Chromosome 4CM045644.1=NC_066317.10
Chromosome 4ACM045645.1=NC_066318.10
Chromosome 5CM045646.1=NC_066319.10
Chromosome 6CM045647.1=NC_066320.10
Chromosome 7CM045648.1=NC_066321.11
Chromosome 8CM045649.1=NC_066322.10
Chromosome 9CM045650.1=NC_066323.10
Chromosome 10CM045651.1=NC_066324.10
Chromosome 11CM045652.1=NC_066325.10
Chromosome 12CM045653.1=NC_066326.10
Chromosome 13CM045654.1=NC_066327.10
Chromosome 14CM045655.1=NC_066328.10
Chromosome 15CM045656.1=NC_066329.10
Chromosome 17CM045657.1=NC_066330.10
Chromosome 18CM045658.1=NC_066331.10
Chromosome 19CM045659.1=NC_066332.10
Chromosome 20CM045660.1=NC_066333.10
Chromosome 21CM045661.1=NC_066334.10
Chromosome 22CM045662.1=NC_066335.10
Chromosome 23CM045663.1=NC_066336.10
Chromosome 24CM045664.1=NC_066337.10
Chromosome 25CM045665.1=NC_066338.10
Chromosome 26CM045666.1=NC_066339.10
Chromosome 27CM045667.1=NC_066340.10
Chromosome 28CM045668.1=NC_066341.10
Chromosome WCM045669.1=NC_066342.10
Chromosome ZCM045670.1=NC_066343.10
unplacedn/an/an/a652

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,050,336,0736841,049,809,07372,083,1771,0540
Chromosome 1Assembled molecule114,833,3231114,815,823114,833,323350
Chromosome 1AAssembled molecule72,083,177172,070,17772,083,177260
Chromosome 2Assembled molecule150,870,6901150,852,690150,870,690360
Chromosome 3Assembled molecule112,686,1361112,664,636112,686,136430
Chromosome 4Assembled molecule71,467,394171,456,39471,467,394220
Chromosome 4AAssembled molecule19,426,148119,425,64819,426,14810
Chromosome 5Assembled molecule62,388,500162,384,00062,388,50090
Chromosome 6Assembled molecule35,159,427135,158,42735,159,42720
Chromosome 7AllAssembled moleculeUnlocalized scaffolds36,479,86830,958,9165,520,95221136,473,86830,956,9165,516,95230,958,91630,958,9165,520,9521248000
Chromosome 8Assembled molecule30,708,553130,704,05330,708,55390
Chromosome 9Assembled molecule25,091,959125,089,45925,091,95950
Chromosome 10Assembled molecule20,524,318120,521,31820,524,31860
Chromosome 11Assembled molecule20,810,500120,803,00020,810,500150
Chromosome 12Assembled molecule20,969,381120,963,38120,969,381120
Chromosome 13Assembled molecule18,206,355118,204,35518,206,35540
Chromosome 14Assembled molecule16,308,344116,306,84416,308,34430
Chromosome 15Assembled molecule13,974,229113,972,72913,974,22930
Chromosome 17Assembled molecule11,217,025111,216,02511,217,02520
Chromosome 18Assembled molecule11,483,696111,479,19611,483,69690
Chromosome 19Assembled molecule11,151,988111,149,98811,151,98840
Chromosome 20Assembled molecule14,760,271114,758,27114,760,27140
Chromosome 21Assembled molecule7,830,93317,821,4337,830,933190
Chromosome 22Assembled molecule4,505,16414,496,6644,505,164170
Chromosome 23Assembled molecule6,465,52816,458,5286,465,528140
Chromosome 24Assembled molecule7,470,54517,461,5457,470,545180
Chromosome 25Assembled molecule15,702,218115,534,71815,702,2183350
Chromosome 26Assembled molecule6,515,66316,508,1636,515,663150
Chromosome 27Assembled molecule5,412,60415,400,6045,412,604240
Chromosome 28Assembled molecule5,507,00015,496,0005,507,000220
Chromosome WAssembled molecule18,818,188118,729,68818,818,1881770
Chromosome ZAssembled molecule75,630,500175,557,00075,630,5001470
unplacedAssembled molecule5,876,4486525,874,44810,23240
MoleculeTotal
Length
Mitochondrion MT16,805