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Source database (GenBank or RefSeq) File type

ASM2088224v1

Organism name:: Rhopalosiphum padi (bird cherry-oat aphid)
Isolate:: XX-2018
BioSample:: SAMN22210470
BioProject:: PRJNA770156
Submitter:: China Agricultural University
Date:: 2021/11/16
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_020882245.1 (latest)
RefSeq assembly accession:: GCF_020882245.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAJFBC01
Assembly method:: HIFI v. October 2021
Expected final version:: yes
Genome coverage:: 21.0x
Sequencing technology:: PacBio Sequel; Illumina NovaSeq

IDs: 11454811 [UID] 30152068 [GenBank] 49842808 [RefSeq]

See Genome Information for Rhopalosiphum padi

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Total sequence length	338,184,925
Total ungapped length	338,066,425
Gaps between scaffolds	0
Number of scaffolds	35
Scaffold N50	92,921,235
Scaffold L50	2
Number of contigs	272
Contig N50	14,338,858
Contig L50	7
Total number of chromosomes and plasmids	4
Number of component sequences (WGS or clone)	35

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Assembly Information

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ASM2088224v1 - Genome - Assembly - NCBI
ASM2088224v1 - Genome - Assembly - NCBI

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Assembly Definition
Assembly Statistics

Global assembly definition

Download the full sequence report

Assembly Unit: Primary Assembly (GCF_020882265.1)

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM037069.1	=	NC_083597.1	0
Chromosome 2	CM037070.1	=	NC_083598.1	0
Chromosome 3	CM037071.1	=	NC_083599.1	0
Chromosome 4	CM037072.1	=	NC_083600.1	0
unplaced	n/a	n/a	n/a	31

Assembly statistics

Primary Assembly

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	338,184,925	35	338,066,425	92,921,235	237	0
Chromosome 1	93,127,588	1	93,121,088	93,127,588	13	0
Chromosome 2	92,921,235	1	92,917,735	92,921,235	7	0
Chromosome 3	82,561,894	1	82,548,894	82,561,894	26	0
Chromosome 4	55,400,643	1	55,398,643	55,400,643	4	0
unplaced	14,173,565	31	14,080,065	12,865,833	187	0