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BCM_Sbol_2.0

  • Anomalous assembly.
Organism name:
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Infraspecific name:
Breed: Bolivian squirrel monkey
Isolate:
100643
Sex:
female
BioSample:
SAMN16846876
BioProject:
PRJNA679316
Submitter:
Baylor College of Medicine Human Genome Sequencing Center
Date:
2021/01/12
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_016699345.1 (replaced)
RefSeq assembly accession:
GCF_016699345.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAEKCL01
Assembly method:
Flye v. 2.6; GCpp v. 1.90; Tigmint v. 1.1.2; Arcs v. 1.0.5; Pilon v. 1.23; Bionano Solve v. 3.4
Expected final version:
no
Genome coverage:
111.0x
Sequencing technology:
PacBio

IDs: 9158311 [UID] 24649928 [GenBank] 24837478 [RefSeq]

See Genome Information for Saimiri boliviensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

In June 2022 4 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length2,651,399,628
Total ungapped length2,639,661,954
Gaps between scaffolds0
Number of scaffolds1,716
Scaffold N5087,238,321
Scaffold L5012
Number of contigs2,790
Contig N504,857,773
Contig L50163
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)2,790

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,651,383,1551,7152,639,645,48187,238,3211,0740
MoleculeTotal
Length
Mitochondrion MT16,473